nature.com

Sitemap

  • Log In
  • Register

nature.com blogs

blogs by NPG staff

Advanced search
  • Nature.com Blogs
  • Blog
  • Archive by Tag

Archive by tag | jeffrey perkel

Newer entriesOlder entries

24 Jul 2018 | 13:00 BST

TechBlog: PacBios are hackable, too

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: PacBios are hackable, too

Sometimes, a DNA sequencer is more than it seems. In this month’s Technology Feature, I talk to the researchers who have figured out ways to squeeze new life from an outdated DNA sequencer, the Illumina GAIIx. That’s a popular choice for sequencer-hackers, but not the only one. Stanford structural biologist Joseph Puglisi uses a PacBio RSII from Pacific Biosciences to plumb the biochemistry of protein translation.  Read more

Tags:

  • jeffrey perkel
  • Joseph Puglisi
  • next-gen sequencing
  • Pacific Biosciences
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

11 Jun 2018 | 17:30 BST

TechBlog: Git: The reproducibility tool scientists love to hate

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: Git: The reproducibility tool scientists love to hate

Early in his graduate career, John Blischak found himself creating figures for his advisor’s grant application.  Read more

Tags:

  • C. Titus Brown
  • GitHub
  • Greg Wilson
  • jeffrey perkel
  • John Blischak
  • reproducibility
  • Software Carpentry
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

07 May 2018 | 12:00 BST

Lattice light-sheet microscopy gets an AO upgrade

Posted by Jeffrey Perkel | Categories: Blog, Technology

Lattice light-sheet microscopy gets an AO upgrade

In late 2014, just a month after learning he had won that year’s Nobel Prize in Chemistry for superresolution microscopy, Eric Betzig and colleagues described a technique that has taken the microscopy world by storm.  Read more

Tags:

  • Eric Betzig
  • jeffrey perkel
  • lattice light-sheet microscopy
  • live-cell imaging
  • microscopy
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

11 Apr 2018 | 12:00 BST

Put your email inbox on a low-spam diet

Posted by Jeffrey Perkel | Categories: Blog, Communication, Technology

Put your email inbox on a low-spam diet

Mark Clemons has published over 250 papers over the past two-plus decades, nearly all of them involving breast cancer. So imagine his surprise when Clemons, a medical oncologist at the University of Ottawa, Canada, received a flattering email inviting him to submit his work to, of all places, a journal focusing on yoga research.  Read more

Tags:

  • better email
  • email
  • jeffrey perkel
  • Kelly Cobey
  • Mark Clemons
  • Mark Gerstein
  • open access
  • open access journals
  • predatory publisher
  • spam
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

23 Feb 2018 | 12:00 GMT

TechBlog: Software quality tests yield best practices

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: Software quality tests yield best practices

Life science research increasingly runs on software. A good fraction, perhaps even most of it, is made by academics, for academics: Rough around the edges, perhaps, but effective — not to mention free. But, is it of high quality?  Read more

Tags:

  • Alexandros Stamatakis
  • bioinformatics
  • Evolutionary biology
  • jeffrey perkel
  • phylogenetics
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

12 Feb 2018 | 12:00 GMT

TechBlog: eLife replaces commenting system with Hypothesis annotations

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: eLife replaces commenting system with Hypothesis annotations

The next time you feel moved to comment on an article in the open-access online journal eLife, be prepared for a different user experience.  Read more

Tags:

  • comments
  • eLife
  • Hypothesis
  • jeffrey perkel
  • techblog
  • technology
  • ~

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

07 Feb 2018 | 12:00 GMT

TechBlog: Interactive figures, a mea culpa

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: Interactive figures, a mea culpa

For the 1 February issue of Nature magazine, I wrote a Toolbox article on interactive figures. Unlike static PDFs or JPEGs, these figures allow users to explore the underlying data and code used to create them, for instance to zoom in on a crowded region of interest, or to probe the robustness of a computational model.  Read more

Tags:

  • Authorea
  • digital publishing
  • interactive figures
  • jeffrey perkel
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

24 Jan 2018 | 12:00 GMT

TechBlog: ‘Carbon rainbow’ enables highly multiplexed microscopy

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: 'Carbon rainbow' enables highly multiplexed microscopy

Fluorescence microscopy has transformed the life sciences. By attaching fluorescent dyes or proteins to cellular structures, researchers can image fine cellular morphology; track molecular localization, motion, and dynamics; and more. But fluorescence microscopy also presents significant obstacles. One of those is multiplexing.  Read more

Tags:

  • bioimaging
  • Carbow
  • imaging
  • jeffrey perkel
  • Raman microscopy
  • techblog
  • technology
  • Wei Min

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

22 Dec 2017 | 12:00 GMT

TechBlog: eMAGE extends the gene-editing toolkit

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: eMAGE extends the gene-editing toolkit

The term “genome-editing” has become synonymous with CRISPR-Cas. But there’s more than one way to edit a genome, and each has its pros and cons.  Read more

Tags:

  • CRISPR
  • Farren Isaacs
  • genome editing
  • George Church
  • jeffrey perkel
  • MAGE
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon

18 Dec 2017 | 12:00 GMT

TechBlog: New instruments advance mass spec imaging

Posted by Jeffrey Perkel | Categories: Blog, Technology

TechBlog: New instruments advance mass spec imaging

The current focus on single-cell biology reflects the growing awareness among life scientists that all cells are not alike.  Read more

Tags:

  • 3D OrbiSIMS
  • Garry Nolan
  • Ian Gilmore
  • IonPath
  • jeffrey perkel
  • mass spec imaging
  • mass spectrometry
  • techblog
  • technology

Article tools

  • Email
  • Share/bookmark

    • Facebook
    • Twitter
    • Delicious
    • Digg
    • Google+
    • LinkedIn
    • Reddit
    • StumbleUpon
Newer entriesOlder entries

About this blog

nature.com blogs
  • E-alert
  • RSS
nature.com blogs home

Search

Categories

  • #NJCE14
  • #NJCEBoston
  • #NJCELondon
  • #NJCESanFrancisco
  • #ScientistOnTheMove
  • – Blessed Okole
  • – Brady Huggett
  • – Bruce Booth
  • – Chris Dippel
  • – Chris Hillier
  • – David Wilson
  • – Ed Rybicki
  • – Fahd Al-Mulla
  • – Fernando Kreutz
  • – James Taylor
  • – Janette Dixon
  • – John McCulloch
  • – Julio Vito Wykrota
  • – Karen Liu
  • – Luiz Antonio Barreto deCastro
  • – Martin Partl
  • – Matthew Chervenak
  • – Michael Francisco
  • – Pramod Yadava
  • – Prashanth Bagali
  • – Samuel JK Abraham
  • – Viren Konde
  • 2012
  • About this blog
  • Academia
  • Academics
  • Access
  • Acoustics
  • Adaptation
  • Admin
  • Advertorial
  • Agriculture
  • AIDS
  • Alicia Newton
  • American Association for Cancer Research
  • American Association for the Advancement of Science
  • American Association of Physical Anthropology
  • American Astronomical Society
  • American Geophysical Union
  • American Physical Society
  • American Society for Cell Biology
  • American Society for Reproductive Medicine
  • American Society of Human Genetics
  • American Society of Microbiology
  • Andrew Mitchinson
  • Animal Behavior Society
  • Animal experiments
  • Anna Barnett
  • Anne Pichon
  • Antarctic field research 2010
  • Anthropolgy
  • Anthropology
  • Apiculture
  • Arboriculture
  • Archaeology
  • Archaeology and anthropology
  • Art of Science
  • Artificial intelligence
  • Arts
  • Ask the expert
  • Astronomy & astrophysics
  • Astrophysics
  • Author benefits
  • Author services
  • Author Services Feedback
  • Author's Corner
  • Authorship
  • Award
  • Awards
  • Awards and prizes
  • Away from home
  • Barcelona climate change conference
  • Behind the paper
  • Bio-imaging
  • Bioinformatics
  • Biological_approaches
  • Biology & Biotechnology
  • Biology and biotechnology
  • Biophysics
  • Biosecurity
  • Biotechnology
  • Blog
  • Blog Information
  • Blogging
  • Blogroll
  • Blogroll
  • books
  • Books & Arts
  • Boston Astronomy
  • Boston biotech
  • Boston Research
  • Boston science
  • Breaking News
  • Browser tabs
  • Burgess Shale Centenary
  • Business
  • Business development
  • Calls for Submissions
  • Canadian icebreaker
  • Cancer biology
  • Carbon markets
  • Career paths
  • Careers
  • Careers articles
  • Cartography
  • Categories
  • Celebrating the Day of Light
  • Cell and molecular biology
  • Cell Biology
  • Chemistry
  • Chemistry
  • Chemistry in retrospect
  • Citation analysis
  • Climate Change
  • Climate Policy
  • Climate prediction
  • Collaboration
  • Communication
  • Communities Happenings
  • Community
  • Competing interests
  • Competition
  • Computational
  • Computational approaches
  • Computational_approaches
  • Computer science
  • Conference Highlights
  • Conference reports
  • Conferences
  • Conservation science
  • COP18
  • COVID19
  • Cryosphere
  • CV
  • Daily Dose
  • Data availability
  • Data integration
  • Data Matters
  • Data policy
  • Data Reuse
  • Design
  • Development
  • Diabetes and metabolism
  • Digital Science
  • Disciplines
  • Diversity
  • Drug discovery
  • Drugs, drugs and more drugs
  • Durban climate summit
  • Earth and environment
  • Earth System Science Partnership
  • Earth, environment & ecology
  • Ebola
  • Ecological Society of America
  • Ecology
  • Ecology and Evolution
  • Editor Posts
  • Editorials
  • Education
  • Elisa De Ranieri
  • Energy
  • Entomology
  • Entrepreneurship
  • Environment
  • Environmental sciences
  • Ethical / Social
  • Ethics
  • Europe
  • European Society of Human Reproduction & Embryology
  • Euroscience Open Forum
  • Events
  • Everest expedition
  • Evolution
  • Evolution and paleontology
  • Expeditions
  • Faculty
  • Featured
  • Feedback
  • Film
  • Films
  • Finance
  • Financial Crisis
  • First Rounders
  • Five Day Filter
  • food science
  • Format
  • Forum
  • Fukushima
  • Funding
  • funding
  • Gavin Armstrong
  • Gene expression
  • Gene function
  • Gene regulation
  • General
  • General interest
  • Genetic association
  • Genetics
  • Genetics & Genomics
  • Genome-wide
  • Geological Society of America
  • Geoscience
  • Giulia Pacchioni
  • Global issues
  • Global Seed Vault opening
  • Grants, tenure and positions
  • Graphene Week
  • Guest blog posts
  • Guest features
  • Guest Post
  • Health
  • Health and medicine
  • Hints and Wrinkles
  • History of genetics
  • History of science
  • HIV/AIDS
  • How to answer
  • I-han Chou
  • Immunology
  • Import
  • In the Field
  • In the News
  • In your element
  • Industry
  • Infectious diseases
  • Institutions
  • Interactions
  • Interdisciplinarity
  • International AIDS conference
  • International Astronomical Union
  • International Relations
  • International Society for Stem Cell Research
  • Internship
  • IP/ Tech Transfer
  • Journal happenings
  • Journal journeys
  • Journal policy
  • Lab life
  • Lab story
  • Lepton Photon
  • Libraries
  • Liesbeth Venema
  • Lindau lessons
  • Lindau Nobel Laureate Meetings (lnlm)
  • Linkage
  • Local news
  • Luigi Martiradonna
  • Lunar and Planetary Science
  • Malaria
  • Marine science
  • Mass spectrometry
  • Materials Girl
  • Materials science
  • Medical research
  • Medical science
  • Meet the editor
  • Meeting report
  • Meetings
  • Mentoring
  • Mentoring and training
  • Metadata
  • Metagenomics
  • Method of the year
  • Microbiology
  • Microscopy & Imaging
  • Military science
  • Misconduct
  • MIT
  • Mitigation
  • Mobility
  • Model Organisms
  • Modeling
  • Molecular gastronomy
  • Monthly Map
  • Move
  • MSB updates
  • Multi-scale
  • Multimedia
  • My science failures
  • Nano-engineering
  • Nanotechnology
  • NASA Phoenix Landing
  • Nascent
  • Natural disasters
  • Natural history
  • Nature Covers
  • Nature Genetics Anniversary
  • Nature Genetics covers
  • Nature Genetics standards
  • Nature Graphics
  • Nature India Annual Volume
  • Nature India Essay Competition
  • Nature India photo contest
  • Nature India Photo Story
  • Nature India Special Issue
  • Nature Methods papers
  • Nature Nanotechnology
  • Nature Network round-up
  • Nature Research
  • nature.com blogs
  • nature.com blogs info
  • NChem research highlights
  • Neil Withers
  • Networks
  • Neuroscience
  • Neuroscience/mental health
  • New in Nature
  • New tools and techniques
  • news
  • News and Events
  • News and Updates
  • NJCE15
  • NJCEDusseldorf
  • Noah Gray
  • NPG special content
  • Obituary
  • Odds and ends
  • Oil spill science
  • Olive Heffernan
  • Oliver Morton
  • On Nature News
  • On the road
  • Open access
  • Open acess
  • Open peer review
  • Ornithology
  • Other authors
  • Other columns
  • Other Contributors
  • Palaeoclimate
  • Palaeontology
  • Paleontology
  • Particle Physics
  • Partnering / Licensing
  • Partners
  • Peer review debate
  • Peer Review Feedback
  • Peer review trial
  • people
  • People Management
  • Perspectives
  • Philosophy or Psychology or Ethics
  • Physics
  • Physics & Mathematics
  • Physics at the interface
  • Physiology
  • Picks of the week
  • Planetary science
  • Planetary sciences
  • Plant biology
  • Plant sciences
  • Podcasts
  • Policies
  • Policies Feedback
  • Policy
  • Policy and Public
  • Politics
  • Pollution
  • Postdoc
  • Postgraduate
  • Poznan climate-change conference
  • Pre-publicity
  • Press Release
  • Print
  • Proteomics
  • Protocols methods recipes cookery
  • Public and media
  • Publications
  • Publishing
  • Publishing tips
  • Quality and value
  • Quality measures
  • Quantitative
  • Quotes of the day
  • Random Thoughts
  • Rare diseases
  • Reactions
  • Regional Initiatives
  • Regulatory
  • Relationships
  • Report
  • Reports
  • Repository Highlights
  • Research
  • Research findings
  • Research Highlights
  • Resources
  • RNAi
  • Road to Copenhagen
  • Roberta Kwok
  • Robotics
  • Roundup
  • Royal Institution
  • Schedules
  • Scholarly impact
  • SciArt scribbles
  • Science
  • Science administration
  • Science around the world
  • Science calendars
  • Science Communication
  • Science communication and outreach
  • Science education
  • science events
  • Science festivals
  • Science film
  • Science Journalism
  • Science maps
  • science news
  • Science Online Bay Area (SoBA)
  • Science Online London (SoLo)
  • Science Online NYC
  • Science Online NYC (SoNYC)
  • Science Online Seattle (SoSEA)
  • Science Online Vancouver (SoVan)
  • Science organisations
  • Sciences
  • Scientific American
  • Scientific publishing
  • Scientific Reports
  • Scientists on the move
  • Sequencing
  • SfN Meeting
  • Silvia Milana
  • Single molecule
  • Site Updates
  • Soapbox Science Info
  • Social media
  • Social sciences
  • Social software
  • Society
  • Society for American Archaeology
  • Society for Developmental Biology
  • Society for Neuroscience
  • Society for the Study of Reproduction
  • SoNYC
  • Space
  • Space and astronomy
  • Spotlights
  • Springer Nature
  • SpringerMaterials
  • Starting the LHC
  • STEM
  • stem cells
  • Stem cells/cloning
  • Stephen Davey
  • Structural Biology
  • Structural Genomics
  • Stuart Cantrill
  • Support
  • Swine flu
  • Synthetic
  • Synthetic Biology
  • Systems
  • Systems Medicine
  • Technical solutions
  • Technology
  • Technology
  • Technology
  • Tenure
  • The News Net
  • There and Back Again
  • This and That
  • Tools and Techniques
  • Transcriptomics
  • Tuberculosis
  • UK
  • Uncategorized
  • Undergraduate
  • Unemployment
  • Union
  • US
  • Video
  • video and podcasts
  • Virology
  • Visualization
  • WCC-3
  • Webcast
  • Webcasts
  • Weekly round-up
  • Weekly Update
  • What's New in Nature Neuroscience
  • Wildlife
  • Wisdom
  • Women's world
  • World Conference of Science Journalists
  • World Science Festival
  • World watch
  • Writing

All nature.com blogs

  • A view From the BridgeA view From the Bridge
  • Action PotentialAction Potential
  • Flat Chat Flat Chat
  • Free AssociationFree Association
  • House of WisdomHouse of Wisdom
  • IndigenusIndigenus
  • MethagoraMethagora
  • Nature Future ConditionalNature Future Conditional
  • nature.com blogsnature.com blogs
  • Naturejobs BlogNaturejobs Blog
  • Of Schemes and Memes BlogOf Schemes and Memes Blog
  • On your wavelengthOn your wavelength
  • Plant LifePlant Life
  • Scientific DataScientific Data
  • Soapbox ScienceSoapbox Science
  • Spoonful of MedicineSpoonful of Medicine
  • StepwiseStepwise
  • The Sceptical ChymistThe Sceptical Chymist
  • Trade SecretsTrade Secrets
  • About us
  • Contact us
  • Accessibility statement
  • Help
  • Privacy policy
  • Use of cookies
  • Legal notice
  • Terms
  • Nature jobs
  • Nature Asia
  • Nature Education
  • RSS web feeds
Advanced search

© 2021 Springer Nature Limited. All Rights Reserved. partner of AGORA, HINARI, OARE, INASP, ORCID, CrossRef and COUNTER