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June 04, 2008

ASM 2008: Therapeutic nihilism

I’ve snuck into a quiet little room with big comfortable chairs and more than one sleeping microbiologist. (With ‘sunrise sessions’ starting at 6.30 AM, who can blame them!) So, as I listen to the gentle snoring of one of my companions, here are a few highlights from a press conference on the human microbiome.

As a loyal NatureNews reader, you’ve heard plenty about the microbiome (for instance here or here). Basically it’s the sum of all the bacteria living in the human body. A frequently trotted out statistic: there are ten times more bacterial cells in the human body than human cells. It’s incredibly complex. Many of your bacteria are different from my bacteria. And the population of bacteria on your forearm is very different from the population in the crease of your elbow, said NYU’s Martin Blaser. David Relman of Stanford noted that our microbiomes might one day be used as a biometric, like a fingerprint, except that the microbes might reveal a bit more: where you’ve been, what you ate while you were there, etc. He also pointed out that microbiomics (my word, not his) began in 1683 when van Leeuwenhoek scraped one of his teeth and compared the results under a microscope to samples taken from his colleagues.

The panelists agreed that since we don’t understand everything that our microbes are doing for us, we also don’t understand the long-term ramifications of taking antibiotics. Blaser speculated that there could be cumulative effects from disrupting your microbiome that we don’t yet appreciate. Claire Fraser-Liggett said her friends call her a 'thereapeutic nihilist' because she avoids taking antibiotics whenever possible.

Blaser made another interesting comment: that our current focus on finding genetic variations linked to disease may one day give way to a realization that differences in our bacteria are just as important.

June 03, 2008

ASM 2008: Biosafety stats

Richard Henkel of the Centers for Disease Control gave a talk yesterday about biosafety in the lab. It was primarily a nitty-gritty run-down of which forms to fill out if there’s a theft, loss, or release of potentially harmful microbes or toxins that are on the US ‘select agent’ list. In case you’re wondering, you may need to file a 'Form 3' in that event. And he gave a few interesting statistics on how many Form 3’s have been filed over the years:
2003: 4
2004: 19
2005: 19
2006: 24
2007: 60 (plus one case in which an institution failed to report an illness contracted from on-the-job exposure)
2008 (through April): 32
(Henkel attributes the dramatic increase to higher awareness of proper reporting.)

ASM 2008: Around the world in 3000 presentations

Between the talks and the poster presentations, researchers here have been studying microbes in just about every environment you can imagine. Here’s a quick run down of what microbes call home: the crook of your elbow, 26,500 year old Antarctic algal mats, the space shuttle assembly platform, a tar pond, hospital room drains, stored space shuttle food waste, the guts of the medicinal leech Hirudo verbana, ready-to-use fresh salad in Vienna, infant formula production facilities, Chihuahua cheese, uranium contaminated groundwater, sea turtle tumours, the ‘dead zone’ off the coast of Oregon, and of course the usual deep sea thermal vents and acid mine drainage pools.

Where they do not call home: the Atacama Desert.

June 02, 2008

ASM 2008: Yum... mercury

Two researchers from the University of Colorado in Denver, Munira Albuthi and Timberley Roane, are proposing an unusual use for an unusual bacterium: detoxifying Native American artifacts.

The bacterium is Cupriavidus metallidurans CH34 (the bacterium formerly known as Ralstonia metallidurans CH34, for those of you keeping track). C. metallidurans has an unusual ability to flourish around heavy metals at concentrations that would normally be lethal. (The critter was first isolated from the sludge of a Belgium zinc decantation tank, according to the Joint Genomes Institute.)

Now, Albuthi and Roane hope to use the bacterium to decontaminate Native American artifacts. The artifacts were once collected by museums, but have since been returned to Native American tribes. Unfortunately, before they were returned, the artifacts were treated with a mercury-containing pesticide for preservation. The mercury poses a health hazard, and Albuthi and Roane hope to spray down the artifacts with C. metallidurans, which is able to detoxify the mercury. So far, they’re just in preliminary stages of testing, but the bacterium was able to remove 60% of the mercury from a mercury-soaked piece of paper.

ASM 2008: Microbes do the darndest things

Hello and welcome to the American Society for Microbiology’s annual microbial extravaganza! This year’s shindig is in Boston, and the Boston Convention and Exhibition Center has literally laid out a red carpet to welcome the glitterati of the microbiology world. (I was amused to see that they’ve also placed the pressroom right next to the children’s daycare center. A subtle comment on our maturity level? Perhaps.)

Judging from this morning’s poster session, this looks to be a fun meeting. It’s a busy one, too – with over 3000 presentations, it can be hard to pick out which ones to attend. If any of you out there have suggestions to help me weed through the 300+ page program, please let me know: you can contact me by posting a comment here or via email: h.ledford at boston dot nature dot com.

September 18, 2007

Arctic sea ice at record low

Open waters in northern ocean highlight massive melting.

Even for a society jaded by the continual breaking of climate records, the retreat of Arctic ice this year is stunning.

read the story here

May 26, 2006

Stomach bug makes food yield more calories

Mice with a hefty dose of a certain gut bacteria are fatter.

Scientists have identified a key microbe in our guts that helps us glean more calories from food. The discovery backs the idea that the type of microbes in our gut help to determine how much weight we gain, and that seeding the intestine with particular bugs could help fight obesity.

Read the story here.

May 25, 2006

ASM: Cold, high, ultrasmall and infinite.

I think we humans should surrender: we are clearly surpassed by microbes.

Continue reading "ASM: Cold, high, ultrasmall and infinite." »

May 24, 2006

ASM: Fungi mushroom

Bacteria are so yesterday. Today I’m all over fungi. I just spent two hours taking a crash course in a room full of fungus-lovers.

Continue reading "ASM: Fungi mushroom" »

May 23, 2006

ASM: Bacterial empires

The last weird bacterial factoids for today. David Relman of Stanford University has examined the bacteria lurking in twelve different spots of the same person’s mouth and used genetics to identify the types of bacteria living there.

Relman found that each spot in the mouth – and even four spots on the same tooth – host hundreds of bacterial species and a completely different collection of them. Our mouths, it seems, are not just one sea of saliva washing a few bacteria back and forth. It is more of a collection of rock-pools, each holding a different collection of bugs.

Continue reading "ASM: Bacterial empires" »

ASM: Off the menu

Walk around for too long at this meeting and suddenly everything seems to be swarming with potentially evil bacteria. But orange juice? Could they deprive me of that?

Oh yes. Once, food poisoning was the realm of chicken and eggs and greasy joints with roach-ridden kitchens. Not any more.

Continue reading "ASM: Off the menu" »

ASM: Superbugging

MRSA (Methicillin resistant Staphylococcus aureus, to use its full name) is rife in hospitals, prisons and pretty much everywhere else.

But after a crash course in Staphylococcus aureus, it seems that the picture is far more complicated (when is it not?). Not all S. aureus are created equal, as Vance Fowler, of Duke University, told me.

Continue reading "ASM: Superbugging" »

Predatory bacteria could make antibiotics

Bug-eating bugs destroy life-threatening biofilms.

Little-known predatory bacteria can suck out the innards of bugs that cause lethal lung infections, microbiologists have shown, raising the hope that they might one day provide an alternative to conventional antibiotics.

Read the story here.

ASM: Mould ate my house

Amidst all this dispassionate science, there’s nothing like a personal story to raise a round of applause.

Microbiologist Joan Bennett worked in New Orleans before Hurricane Katrina slammed into the city last summer -- so she had a particular interest in the mould that invaded her home after the floodwaters subsided.

Continue reading "ASM: Mould ate my house" »

May 22, 2006

ASM: Moving target

Here’s a cautionary tale for microbiologists everywhere. The bacteria you put to bed at night may not be the same as the ones that you awake in the morning.

This is news to me. I thought an E. coli was an E. coli, whichever way you cut it. Beloved, trusty, experimental ally of molecular biologists. Only get really interesting when they acquire the suffix 0157 and swarm over contaminated meat.

Continue reading "ASM: Moving target" »

May 19, 2006

American Society for Microbiology

Everyone who’s anyone in the study of bacteria, fungi and viruses will be at the American Society for Microbiology meeting in Orlando, 21 -25 May. Helen Pearson will be learning what's new in germs, and recording her thoughts here.

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