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Archive by date: March 2008

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Recent editorial is meant to urge caution, not attack a scientist

I’ve gotten a couple of emails about an editorial Nature recently ran urging scientists in the iPS field not to rush. It starts by relating an anonymous attack against Shinya Yamanaka for a minor problem. That’s supposed to get folks’ attention, but it is absolutely not the point of the article, which is to urge caution to everyone who is in and rushing into a very hot, very young field that is also politically charged.

The article is not questioning Shinya Yamanaka as a scientist. (It’s common for mistakes to slip through, and there are mechanisms to correct that.) The editorial is about what happens (confusion) and can sometimes happen (fraud) in hot, new fields, and this is going to be even worse for stem cell scientists because the field is politically charged as well. Shinya Yamanaka has already dealt with the accusations in a way that seems to have satisfied Science, and so delving any more into them would actually elevate the accusations of an anonymous emailer, giving the accusations more attention than they deserve.

The idea for the editorial started after PrimeGen decided to publish its findings on viral-free reprogramming by press release. Here was an accomplishment that the whole community was waiting for, but no one could assess it, and so Nature felt that we needed to say something about how people need to be more patient in a hot field. And then a few days later, the anonymous email got sent to many journalists and journal editors, and it seemed a call for caution was even more necessary.

So again, the editorial is urging caution in a hot, politically charged field. It is not about one of the field’s best-loved and most-respected scientists.

I’ll blog again as I get more feedback and hear more thoughts, but I wanted to get this up quickly. In the meantime, I want to say that much thought went into this editorial. You might be interested in how I think some decisions are made. (I don’t have first-hand knowledge of much of this, but I think I can guess.) Also, I should emphasize that stuff I've written above is just me; I haven't yet weighed in on the collective wisdom of NPG.

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Therapeutic cloning helps mice with Parkinson's

It’s worth noting that the exciting paper in Nature Medicine is grabbing headlines not so much for the advance in Parkinson’s disease but because it is the first time that cells derived from cloned embryonic stem cells have been used to ameliorate disease. In the Nature Medicine paper from Sloan-Kettering’s Viviane Tabar and Lorenz Studer and others, researchers report that cells survived much better and mice’s symptoms improved if they were transplanted with genetically matched neurons.

For those of you coming back from Easter weekend to see Monday’s headlines, Nature reported on this story on Friday, making it harder to find now. Here it is . Other reports come from Bloomberg and the Guardian. And just to keep things in perspective, here’s a report of a non-stem cell breakthrough in Parkinson’s in mice based on research published in Nature just over a year ago.

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A new protein in the pluripotency circuit represses microRNA

Majumder.jpg
Here's an accounting of how an interesting Nature paper, published online this Sunday, came to be.

Sadhan Majumder (pictured right) sought a better understanding of childhood brain cancer. He ended up finding a new regulator of self-renewal in embryonic stem cells along with a previously unknown mechanism of how this state is maintained.

While working on one of the most malignant childhood brain tumours, medulloblastoma, Majumder and his group thought much of the blame for the cancer might lie on a protein called REST (which has the burdensome full name of repressor element-1 silencing transcription factor/neuron-restrictive silencing factor). REST was originally believed to repress the final stages of neuronal differentiation. “We were working on REST in neurogenesis like everyone else,” Majumder recalls, “and we found that in medulloblastoma, abnormal expression of REST maintains the proliferative state of neural stem or progenitor cells and blocks their differentiation. Basically, it maintains the ‘stemness’ of these cells.” In fact, if REST is introduced artificially into neural stem cells, he says, they will not differentiate. “That told us that it may have a role in self-renewal,” says Majumder. “Then this paper from Gail Mandel came out that showed REST was expressed in embryonic stem cells.” He laughs as he described how he decided on his next experiments. “I have a tremendous grasp of the obvious.”

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Patients paying for stem cells are probably getting bad science

Desperate patients need help separating legitimate researchers from quacks, said representatives the biggest organization for stem cell researchers, who announced that they’d decided to draft guidelines for how basic research on stem cells can be responsibly “translated” to research on human patients. The guidelines will cover embryonic stem cells plus those collected from cord blood and adults, as well as stem cells induced from differentiated cells.

At a press conference in Half Moon Bay, California, a panel of highly influential officials and researchers in stem cell science said they were alarmed at “medical tourism” in pursuit of questionable and potentially harmful stem cell procedures. The only established stem-cell treatments are for a handful of blood diseases, they said, but advertisers promise cures for every imaginable disease. Story Landis, head of the National Institute of Neurological Disorders and Stroke and George Daley, president of the International Society for Stem cell Research said their organizations were besieged by patient queries about treatments whose risks and benefits are unknown. The ISSCR plans to produce guidelines to help such patients and their families assess whether practitioners’ claims are credible.

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CIRM has a new scientific head

Yesterday, the California Institute of Regenerative Medicine named Marie E. Csete, MD, PhD as its chief scientific officer. She's currently at Emory University doing basic research looking at the role of oxygen in stem cell death and differentiation plus applied work in anesthesiology and liver transplants. She has served on CIRM's scientific and medical research funding working group, which reviews grants.

The former CSO, Arlene Chiu, was recruited from NIH. I've heard her praised widely both within and outside the agency for her diligence, fiestiness, for building a grants reviewing process from scratch, and for great ideas in the scientific strategic plan. Chiu resigned shortly after Zach Hall, CIRM's first president, did. (Read about that on the California Stem Cell Report.)

CIRM's structure is unusual; its officials have built-in restrictions that many aren't used to (see our article on CIRM's search for a president). What's interesting in this appointment is that Marie Csete is an MD/PhD with significant clinical expertise, the kind of expertise that CIRM leadership has said is necessary to move stem-cell work from bench to bedside.

Here's a profile of the new CSO written last year by Emory's press office.
Here's CIRM's press release, packed with glowing appraisals.(I couldn't find a link on CIRM's site, so I'll paste my email below)

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Banking on the future of stem cells: Q&A with the head of the UK Medical Research Council

On 26-27 February, representatives from 19 countries plus California and the Juvenile Diabetes Research Foundation discussed international collaboration for stem cell research, particularly how to coordinate cell banks and registries. Announcements included that India would become the 20th country to join the forum and that induced pluripotent stem cell lines would not be included in the characterization efforts already well underway for embryonic stem cell lines, but that decision would be reconsidered at the meeting in October. (See our commentary and research highlight on ISCF-funded projects.)
The group of research funders, known as the International Stem Cell Forum (ISCF) was founded in January 2003 through the UK’s Medical Research Council (MRC).
In an interview with me, chief executive of the MRC, Sir Leszek Borysiewicz described the ISCF’s efforts. A shorter, prettier version of this is online at Nature. I expect it will print next week.

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USPTO upholds other WARF stem-cell patents

News that the patent office has upheld the final two of three patents covering the derivation and use of embryonic stem cells held by the Wisconsin Alumni Research Foundation. The topic generated more buzz when the first, and reportedly least important, patent was upheld. (See our blog.)

The most extensive coverage I found was in the and the Business Journal of Milwaukee. and Wisconsin Technology Network., which reported the following:
During the re-examination, all three patents were modified in ways that narrowed their scope, and WARF lost its eligibility to claim certain damages, but most of the patent claims in 780 and 806 have been upheld.

WTN also quotes WARF officials saying that the ruling was good news for biotech investors:
Gulbrandsen also said that if the patent ruling had gone the other way, it would have had ramifications beyond WARF, especially given the many patents issued for other biological material and cells. "It would be saying that very little is patentable in the technology area due to the obviousness issues," he said. "In this environment, people are worried enough about investing due to the credit crunch."

The patent challengers say that the patents have limted investment in stem cell technologies that their efforts have already succeeded because WARF is being more generous in supplying embryonic stem cell lines and licenses.

What I did not see was looking outside the US; both Singapore and the UK are gearing up to supply embryonic stem cell lines that could, when differentiated, be used in clinical trials. The patent situation on induced pluripotent stem cells (differentiated cells treated to behave like embryonic stem cells) will be much more open, since multiple methods seem to work on the cells and more than one group of scientists have reported them at about the same time.

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Umbilical Cord Blood Companies in Asia

This week, announcements of deals to bank and use umbilical cord blood in China, India, Vietnam and South Korea point to an industry that is both promising and prone to overpromising. Companies trying to attract self-paying patients often conflate established therapies with highly experimental and unproven procedures.

Cord blood banking is already an established business. Today, BioSpectrumAsia reported a joint venture between Apollo Therapeutics and Cadila Pharmaceuticals in India and the well-known cord blood company StemCyte.

Established uses cord blood include blood disorders, bone-marrow failure, and genetic metabolism disorders. Many researchers are trying to figure out just what these cells are capable of. Saudi Arabia is heavily investing in blood-derived stem cells and banks geared at treating the population in the Middle East. ( See our article ). The Chinese government has also announced plans to open two more umbilical cord blood banks for non-kin transplants.

In a policy statement that’s full of information, the American Academy of Pediatrics discourages private cord blood banking and warns against unsubstantiated claims. “Cord blood donation should be discouraged when cord blood stored in a bank is to be directed for later personal or family use, because most conditions that might be helped by cord blood stem cells already exist in the infant’s cord blood (ie, premalignant changes in stem cells).”

This is the kind of private cord blood service that will soon be offered in Vietnam. Vietnamnet reports that a Singapore company, CordLabs, agreed to transfer technology to a Vietnamese company, Mekophar. Beginning some time next quarter, parents can, for $2000, deposit umbilical cords and umbilical membranes of their children for 25 years. According to an earlier article, the company intends to establish four stem cell banks in Vietnam. The articles indicate that the project also includes public banking and charity services, plus Vietnam’s desire to foster this kind of research. The articles did not specify what promises were being made to parents.

A merger of an umbilical cord stem-cell company with a stem-cell company reveals the broadest and most unsubstantiated claims. South Korea-based Histostem plans to merge with the Florida company, Stem Cell Therapy International.

Though StemCyte can be accused of overstating, the only disease that StemCyte mentions specifically on its homepage is the blood disorder thalassemia. Stem Cell Therapy’s website, in contrast, is full of promises. It boasts videos and personal accounts of patients receiving stem cell therapies for multiple sclerosis and stroke. Two “solutions” are the “rejuvenation of women during menopause” and “complex therapy of cosmetics problems.” Its website states, “A documented 5 millions of patients have been so treated worldwide to-date, evidenced by over 120,000 publications in MEDLINE amongst others.” It does not say that the vast majority of current stem-cell treatments are for blood disorders or to supply functioning bone marrow. Nor does it say that stem-cell treatments for neurodegenerative disorders are, to say the least, far from established. A review on blood- and marrow-derived stem cell treatments in JAMA published Feb 27, 2008 by Burt and others found only 69 reports to assess, including several on multiple sclerosis. The editors’ summary was “Their analysis suggests that stem cells harvested from blood or bone marrow may provide modest disease-ameliorating effects in selected patients with some autoimmune diseases and some cardiovascular disorders.”

At the bottom of Stem Cell Therapy’s home page, are glowing adjectives: “approved” among them, but clicking on that word does not tell me what entity approved the therapies. Here’s how the head of the Korean Histostem, Han Hoon, describes the strategy in a press release issued by the two companies. “We intend to take the research data that the Korean FDA already approved and submit it to the U.S. FDA, with the objective of getting the U.S. FDA approval in advance of other companies now researching umbilical stem cell treatments for a variety of different diseases." My understanding is that while the Korean FDA is supervising some trials with these cells, it has not approved any therapies.

There are organizations that are trying to ensure that promising results for potential therapeutic applications don’t transform into unsubstantiated claims. The Stem Cell Network of the Asian-Pacific Region ( SNAP ) has taken on the ambitious goal of helping people know where the science stands because, in the words of one of the founders, “There’s a lot of bad information out there.”


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Roche to test heart drugs on differentiated embryonic stem cells

According to GenomeNews, Roche is going to use cardiomyocytes derived from human embryonic stem cells to test potential heart drugs for toxicity. The cells are coming from Cellular Dynamics International, founded by James Thomson, who is famous both for being the first to derive human embryonic stem cells and contributing to the broad patents that many researchers feel restrict their use. (See our commentary)
Lots of experimental drugs fail because they cause problems in heart rhythmns; it's one reason for that famous estimate that it takes over a billion dollars and ten years to bring a drug to market. Lots of companies are hoping to cash in on using human cells for this kind of drug testing. The hope is that not only will such tests be more accurate than animal studies, they can provide a cheaper and kinder alternative. A group of pharmaceutical companies (AstraZeneca, Roche, Pfizer and others) along with the UK government has formed a consortium to do just this (see our article), and the famous Singapore company has adopted cell screening as a business model, after deciding to put its therapeutic work on hold (See our article).
The situation is muddled in the US, because these cells are being used as research tools, and how stem-cell patents will be enforced on research tools used to show drugs' safety and efficacy is still up in the air (see our article).

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Round-up of research articles

There are so many articles I see and don't have time to write research highlights on and so many that I miss. Here's what caught my eye this week.

Protein in embryonic stem cells controls malignant tumor cells (PNAS)

Adult stem cells seem to help some autoimmune and cardiovascular diseases (JAMA)

Adult stem cell changes underlie rare genetic disease associated with accelerated aging (Nature Chemical Biology)

Multiple articles on MicroRNA (Nature on skin differentiation; Cell Stem Cell on mesoderm differentiation; Nature Structural & Molecular biology on mechanism)

Those hunting for kidney stem cells might want to look in the tubule (Cell Stem Cell)

For more on these, see below.

(BTW: Pulling these together takes forever; so if it’s useful, please let me know. Also, we are, gradually, putting all these articles in our Journal Club, where you can add interesting articles as well.)

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