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Archive by date: June 2008

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ISSCR Round-up Take 2

Alexey Bersenev just sent in his detailed take on the ISSCR meeting, in which he also compiled a list of other blogs on the meeting. Thanks!

Just to keep the Nature comments on ISSCR in one place, here’s another list.
My speed-writing on impressions from ISSCR.
Nature’s Brendan Maher posted on Doug Melton’s talk on reprogramming in situ. Who needs pluripotency? Let’s go straight to the cells we need!

How do you know a reprogrammed cell is reprogrammed?
Scientists consider minimum standards for induced pluripotent stem cells
My blog post on the same topic links to articles on iPS cell advances.

Stem cell society condemns unproven treatments
The ISSCR is drawing up guidelines for clinical practice. How will patients and practitioners respond?

Read our feature Stem cell researchers face down stem cell tourism

Also, just weeks before the ISSCR meeting, stem cell researchers gathered for their version of summer camp, Cold Spring Harbor Laboratory Symposium, where the ratio of content learned
Read my impressions.

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Mind control: new work on differentiating neural stem cells

Here's a highlight summarizing three new papers.

Neural stem cells continuously form new neurons in the adult brain. But after injury, these stem cells seem able to become other cell types, such as glial cells that support neurons. This flexibility helps the brain heal naturally, but it poses a problem because researchers developing treatments for neurological diseases want to be able to direct cells to desired fates. In some diseases only new neurons are needed; for others the non-neuronal cells are essential. In a series of recent papers, two La Jolla, California, research groups provide potential solutions to these brain-bending problems, showing that overexpression of single genes can reliably direct neural differentiation.

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Cell paper: The latest pluripotency factor is a lone warrior

Ronin takes a place beside, but not with, Oct4, Nanog, and Sox2

(This is out in Cell today. The research highlight will appear on our site on July 10)
Embryonic stem cells exist in a state of suspended differentiation; they are able to become any cell type but resist taking on any particular fate. A trio of transcription factors is widely recognized as essential to this pluripotent state: Oct4, Nanog and Sox2. These proteins interact closely with each other and often bind the same or nearby sites on DNA. Now, work by Thomas Zwaka of the Baylor College of Medicine in Houston, Texas, and colleagues reveals another protein that works outside this pluripotency network1. He dubbed it Ronin, the word for a samurai warrior without a master.

Zwaka came upon Ronin serendipitously. His previous work had shown that caspase-3, an enzyme that regulates cell death, also affects pluripotency by cleaving Nanog. Zwaka suspected that this enzyme might have additional roles to play in pluripotency, so his lab carried out a laborious large-scale screen called a yeast two-hybrid assay to figure out what other proteins the caspase interacted with. This screen pulled out the protein that is now called Ronin, and Zwaka’s team set about conducting a series of experiments to find out what it does.

Ronin is expressed only in oocytes, early embryos and some regions of the brain where cells proliferate. Neither embryos nor embryonic stem (ES) cells lacking Ronin can survive. If Ronin was overexpressed, mouse stem cells failed to differentiate even under conditions (the removal of a key growth factor) that caused all stem cells with normal Ronin expression to do so.

To really know that overexpression of Ronin can maintain ES cells without growth factors, the cells should be grown over several passages, says Qi-Long Ying, a stem cell scientist at the University of Southern California, in Los Angeles, who recently reported a cocktail of small molecules that allow mouse ES cells to proliferate without the growth factors typically required2. “I don’t know that they tested for prolonged culture.” Nonetheless, he says, Ronin seems to be a new essential factor for maintaining both pluripotency and early embryonic development. “It’s very important and also very interesting.”

Ronin seems to act through chromatin regulation. It has a zinc-finger DNA-binding motif called THAP that is often found in proteins that modify chromatin; Ronin also binds another protein called host cell factor-1 (HCF-1) that, along with other proteins, helps to modify histones, the structures within cells that package DNA into chromatin and help regulate gene expression. Ronin also seems highly conserved across species: the gene that encodes it is quite similar in humans and zebrafish, and there is even an apparent homologue in sea urchins.

It makes sense that important functions like self-renewal are regulated by a network and not a handful of factors, says Sadhan Majumder at the M.D. Anderson Cancer Center, in Houston, Texas, who has identified components of pluripotency networks3. “I think scientists are focusing on a few molecules that have so far been discovered, but I am sure that the network is controlled by many,” he says. Any of these network components could shift a cell’s equilibrium between self-renewal and differentiation.

Zwaka says that the next steps are to search for a Ronin regulatory network and other Ronin-related proteins. He’s also testing to see if Ronin can reprogram cells to pluripotency in the absence of other known reprogramming factors.

Related articles
Off with differentiation


Repressing microRNAs for pluripotency

References
1. Dejosez, M. et al. Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells. Cell 133, 1162–1174 (2008). | Article |
2. Ying, Q.-L. et al. The ground state of embryonic stem cell self-renewal. Nature 453, 519–523 (2008). | Article |
3. Singh, S. et al. REST/NRSF maintains self-renewal and pluripotency of embryonic stem cells. Nature 453, 223–227 (2008). | Article |

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Fat patent stem cell wars

One way of knowing that a technology might have commercial applications is when the patent wars start. This week BioCentury reports that a North Carolina company called Artecel just won an exclusive right to a composition-of-matter patent covering stem cells derived from adipose tissue. According to some reports, stem cells in fat appear to be capable of differentiating into other tissue types. Cytori, a California-based stem cell company that no longer has rights to the patent, was developing the cells for heart disease and reconstructive surgeries. Artecel is less specific about its goals, saying the cells will be used for “soft tissue and cosmetics applications.”

At issue was whether University of California, Los Angeles scientists who had licensed their technology to Cytori had a right to the patent. In 2004, University of PIttsburgh, who had licensed the technology to Artecel, filed a suit to remove the UCLA scientists from the patent. Earlier this month, a United States district court in California ruled in their favor.

Here is the press release from Artecel. In Cytori’s press release, the company said that the decision did not affect its ongoing business practices because the device that enriches collected samples for stem cells for reinjection is still patented. The decision might affect their product pipeline, though.

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Stem cells in fat might help arthritic dogs walk

An article in TIME describes a San Diego company that is already offering a procedure using stem cells collected from fat to treat pets with bad hips. Fat is scooped from a dog's abdomen, and then the stem cells are isolated with centrifugation (spinning test tubes of cells so that the heaviest ones go to the bottom) and injected into the problematic area.

The techniques that I know of to isolate stem cells rely on identifying markers on cell surfaces; in fact, the company introduces a mixture of cells to the site of injury. Because these cells are minimally manipulated, they don’t require the FDA’s approval to be transplanted into the same patient they were collected from

But, it’s not so much the cells as it is their effects that matter, and the company has published an article on these effects in a journal indexed in PubMed. It examines results of treatment for 90 days and found improvement in the stem cell group. A follow-up would be interesting because these effects might be transient. Human transplants of mesenchymal stem cells for nonorthopedic indications sometimes show initial improvement that quickly fades away.

The TIME reporter writes that these cells then become cartilage and tendons, and it is true that mesenchymal stem cells, a sort that is found mainly in bone marrow but can also be derived from fat, can become cartilage-producing cells; however, there is quite a bit of debate about what the cells really differentiate into, and claims on this company’s website seem, to me, appropriately couched.

The company seems more keen to demonstrate efficacy than mechanism, which would make the most sense for the bottom line. It looks like there’s more to learn, though.

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Pfizer dips a toe into cell therapy

Here’s some news on the commercial front that shows stem cell therapy moving forward. The pharmaceutical giant Pfizer has made a teeny-tiny investment in stem cells, according to an article in Forbes.

Pfizer is financing a company called EyeCyte, which hopes to use cells from the blood and bone marrow to repair damaged blood vessels in the eyes of patients suffering from diabetes and macular degeneration. Pfizer spends over $8 billion in research and development and is investing $3 million in EyeCyte in exchange for having part ownership of the company and being its sole pharmaceutical partner. If the therapyworks, though, the payoff could be huge: biologics against macular degeneration have proved big business.


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Papers: Reprogramming [cells], resetting [expression], and revising [ideas on cell fate]

Here are some recently published papers that caught my eye: a pair of papers showing that small molecules boost the success of turning regular-old cells into embryonic-like cells (called induced pluripotent cells); one paper even shows that the ubiquitous pluripotency gene Oct4 is not required. These are in Nature Biotechnology and Cell Stem Cell, and they’ll be up on my site as formal research highlights on July 3. You can see them now below. The author of the Cell Stem Cell paper recently spoke to us about how small molecules can control stem cells.

To try to understand what’s going on, try a review in Nature Reviews Molecular Cell Biology by Kevin Eggan and others describes how the machinery controlling gene expression has to be re-established with each cell division, and how oocytes and reprogramming methods can reset this expression. It’s part of a series of article on stem cells.

Next, some papers characterizing stem cells in the body. A couple Nature papers show heart stem cells with surprising flexibility in surprising places. That highlights will also be on the site on July 3rd, and it’s posted below. A few months ago, our editor at large, Natalie DeWitt, attended a meeting where scientists debated what cells in the heart could heal. Now there's more to talk about.

And one more: Nance Beyer Nardi of the Universidade Federal do Rio Grande do Sul in Brazil and colleagues have published a paper in Stem Cells characterizing the natural niche of mesenchymal stem cells, which are being tested clinically for a variety of indications. It says these cells hang out around blood vessels, stabilizing them and helping the immune system respond to homeostasis. “This view,” the researchers write “connects the MSC to the immune and vascular systems, emphasizing its role as a physiological integrator and its importance in tissue repair/regeneration.” It’s one of the Open Access articles this week.

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Send me your write-ups of ISSCR

I'm overwhelmed with notes that I feel like I need to fact-check, but I'd like to get something up sooner rather than later. So here's a speed-writing experiment. I've set the timer for twenty minutes, and I'll tap out my impresssions. All of you who read this blog and have something to say (that's not a press release), send me your links!

Here's the first, a short write-up from someone who went to the ISSCR conference here.

The big buzz was on Doug Melton's talk. He showed that reprogramming need not take cells all the way back to the embryonic ground state. After all, cells take weeks and weeks to differentiate out of pluripotency and into something useful. Why not avoid the backtracking and go straight to the cell state you want? He introduced a set of islet genes into non-islet pancreatic cells in mice and found that non-islet cells changed shape, started secreting insulin and responding to glucose. They helped out a diabetic mouse model. One question in my mind: when is it gene therapy, and when is it reprogramming? Is that a distinction that matters?

13 minutes left
But this kind of "teleport" reprogramming where you go direct from one differentiated cell type to another is clearly just budding. It's the iPS cells that are in full fragrant bloom. People are characterizing them, making new sorts. Geroge Daley has made a whole bouquet of disease-specific sorts from patients with particular diseases, two kinds of muscular dystrophy, Gaucher's disease, Huntington's disease, Down's syndrome. Dong-Wok from Korea has made some from Parkinson's. Remember the monkey from whom cloned embryonic stem cells were made last year? He's got (or is getting) an iPS cell line too.

9 minutes left: reprogramming needs a sense of histony
And that leads to the next thing. Really, really sophisticated characterization of epigenetic machinery in iPS cells. I think it takes a sense of histone-y. John Gurdon (so famous they named his institute after him) showed us how histones can preserve epignetic memory in reprogramming frog nuclei even after a couple dozen cell division and two exposures to the magic reprogramming mix in oocytes. He had a movie of a great histone swap-out that occurs in oocytes, and even had a model how one sort of histone could attract another, allowing their gene activation or supporession effects to be preserved. Alex Meissner at the Broad Institute analyzed how histone-based epigenetics could control extent of reprogramming and even found a way to use regulatory RNAs to kick partially reprogrammed cells into a fully reprogrammed state. And finally, Janet Rossant at the University of Toronto compared mouse iPS cells with mouse ES cells derived from the inner cell mass and the epiblast. iPS cells seem more like epiblast. There are many sorts of pluripotent cells, but they seem to have different tendencies in terms of what cells they like to become. And genetic engineering can shift them from one to another. What do we do with that information? iPS cells can even display different extents of reprogramming, perhaps making it necessary to set up a grading system for iPS. That's something I already blogged about.

2 minutes left
There are also emerging tehcniques to watch stem cells both in vivo and in vitro and figure out what they are doing functionally. Kateri Moore at Mt Sinai has a cool system using inducible promoers and green fluroescent proteins to track divisions in the bone marrow niche and identified different pools of stem and progenitor cells;Jianhong Zhu at Fudan University Huashan Hospital has acutally used superparamagnetic iron oxide nanoparticles to label neural stem cells and watched them go to sites of injury in patients with head trauma (no patients have did yet in the three years of the study, so no autopsies). In vitro, the NIH's Dan Hoeppner is using a ranibow of fluroescently tagged proteins to track how nerual cells shift into differentiation and lesser form of multipotency.

TIME.
(Checking spelling of proper nouns and a bit of grammar took more time than the typing, and I left out so much cool stuff! In the meantime, please send me your thoughts of people's work besides your own. No press releases! No "I think scientists really need to consider "insert screed" Everything else, please send it on!)

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Old stem cells made young; more maps of pluripotency

Once again, there are more great papers out there than I can write about. Below are two that will show up on the site in a few days. (Nature Reports web production schedule requires a week). Also check out Tom Zwaka's paper that finds another, powerful control over Nanog; Sheng Ding shows that small molecules can substitute for two of the four Yamanaka factors, inching closer to reprogramming without viruses; in a high-throughput screen, Lorenz Studer shows us how known drugs affect human embryonic stem cells, a technique that might reveal unwanted side effects. (Those are all in the most recent Cell Stem Cell; see our Q&A with Sheng Ding on the potential of small molecules.)

See below for these papers along with links to less specialized articles.
A metasignalling network makes muscles age (Irina Conboy on skeletal muscle)
Two networks of pluripotency (Chia-Lin Wei and Huck-Hui Ng map transcription factor binding sites to find 'stemness hotspots')

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Panel: how do you know an iPS cell is an iPS cell?

The buzz around induced pluripotent stem (iPS) cells has shifted from how to make them to how to use them. But with more and more laboratories jumping into the field, how can scientists know other scientists (and journal editors) will trust results from the cells they made? In short, what are the minimum criteria for iPS cells?

Five scientists who have reprogrammed cells to pluripotency weighed in on this question. (George Daley from Harvard University; Alex Meissner from the Broad Institute; Kathrin Plath from UCLA; Kazuhiro Sakurada from iZUMI Inc; Shinya Yamanaka of Kyoto University; Junying Yu from the University of Wisconsin-Madison)

Yu answered the question first, citing expression of key antigens and a gene expression profile; Yamanaka said that the retroviral genes still necessary to make the cells needed to be silenced; Meissner thought some sort of genomewide screen examining the epigenetic status would be good. The ability to differentiate into different lineages seemed important.

But what about the traditional test the teratoma? Daley asked. Jun, when prompted, said the “only reliable” in vivo test is to inject cells in a mouse and wait for the formation of a teratoma (a tumor that makes cells representing all the major cells). But that can take two or three months, said Daley, and what does it mean?

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Stem-cell society condemns undocumented human treatments without oversight

The ISSCR today condemned unproven stem-cell treatments that are not designed to learn and report information and that are conducted without oversight, particularly if patients are charged for advertised medical services. Originally a task force within the ISSCR was supposed to release a draft of guidelines on Thursday. After disagreements about how specific the guidelines should be and how stringent a tone to take, the group decided instead to announce over-arching principles at its annual meeting.
The ISSCR particularly condemns giving unproven treatments that are advertised as medical services for paying patients. In fact, instead of stem-cell treatment, the preferred term is “stem-cell based intervention” because the term “treatment” denotes benefit.
See Stem cell scientists face down stem cell tourism
The guidelines will be very broad, basically laying out how to decide when stem-cell product is ready to be tested in people. They will cover how cells should be processed and characterized, what pre-clinical evidence should be collected, how strong the case against risk and for benefit should be, how patients should be informed. They should also consider who research stands to benefit society as a whole.

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ISSCR in Philadelphia

This from Brendan Maher is cross posted from In the Field
Harvard’s Doug Melton, in a plenary talk this afternoon to open the International Society for Stem Cell Research (ISSCR) meeting in Philadelphia, actually didn’t talk about stem cells at all. Rather he discussed new results showing direct differentiation of pancreatic It was clear from the opening session, that a large part of the conference would focus not on the derivation of stem cells, but rather their re-differentation into useful tissues, which is not so easy as one might think. Take the beta cell for example. Melton has had a long-standing project to derive beta cells from es cells. The potential is obvious. For folks with type 1 diabetes, beta cells can be transplanted with limited success, but are currently in short supply (cells from two cadavers are required for the so-called Edmonton protocol).

After four years of work trying to use chemical compounds to edge stem cells down the developmental path of the insulin producing beta cells, he found two with 70% efficiency in moving the cells the very first step in a process that looks to contain maybe six. So, his group began experiments to short circuit the process. Rather than taking an undifferentiated stem cell, could one take a fully developed adult cell and switch its fate using transcription factors without reverting to stem cells? The answer, ostensibly seems to be yes. Screening for upwards of 1000 factors in 5000 mouse embryonic tissue samples, Melton’s lab identified 28 factors that appeared closely related to beta cell differentiation formation. Paring down brought the number to nine. Using a virus to inject the genes that encode these transcription factors into the pancreas of living mice, they were able to cause exocrine cells in the pancreas to start producing insulin and look just like beta cells in every way they’ve looked. Melton says, it’s “not the case that they’ve just turned on the insulin genes. There’s a panoply of genes turned on and off in response to these transcription factors.” They even started producing VEGF and promoting angiogenesis to get blood supply. The group has been able to reliably convert cells to insulin producing beta cells using just three of the nine genes: Ngn3, Pdx1, and Mafa. Mice in which islets had been chemically ablated achieved some level of blood sugar control, but not that of wild type. And despite waning expression of the three genes they injected, the phenotype of the transformed cells remained for several months. Melton says he wouldn’t necessarily predict a gene therapy approach based on his findings, but if in vitro technologies could be adapted, they might increase the number of beta cells for transplant operations. This type of cellular reprogramming involved here is fascinating. I remember when few believed de-differentiation from adult cells to pluripotent stem cells was possible with out the help of egg cytoplasm. iPS cells proved that wrong. This fate-jumping reprogramming without intervening de-differentiation is even more astonishing.


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Organizing stem cell thoughts

I received this comment from my post on the Cold Spring Harbor Conference on controlling stem cells.

Monya wrote: Toward the end of the conference, I had started classifying talks. That way, even if I couldn’t remember what HUH1.1 stood for, I didn’t feel completely lost. The most common type slots individual components into networks. Many conclusion slides exclaimed triumphantly “X targets Y in cell Z under conditions of W”
Perhaps the next most common type of talk identified or characterized cell types. “Cell A makes molecules B,C, and D but not E”. This was often, but still too infrequently, followed by “Cell A does action Y in environment Z.”

One of the challenges and opportunities that exist within the stem cell research community is to organize such information into a computable formulation that can be used to build reasoning from sparse resources of data by combining results from different reports in a structured and annotated format. To accomplish this task effectively, the most cutting-edge and farsighted approach is to use Ontologies.

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Stem cell trials for the heart, getting bigger

The FDA has given the go-ahead for a medium-scale trial to test bone-marrow cells to treat heart disease. Previously, the company had tested using patients’ own cells for heart therapy, but this time they hope to use cells derived from other patients. An April release from the company describes another, smaller trial using non-self or allogeneic cells. The just-announced trial will include study 15 control patients plus 45 patients who will receive different doses of cells, and patients’ outcomes will be followed for a year. If done correctly, such a design could answer important, growing questions in the use of these mesenchymal cells for heart disease. Also, it’s unclear whether it better to use a patient’s own supposedly weak cells or more robust cells from donors, which the recipients’ body may not accept, or how best to design trials to answer these questions. (See our articles Questioning the self cell and Stem cells for the heart, a new wave of clinical trials.

While several clinical studies have found that these kinds of stem-cell treatments seem safe, researchers are just now beginning to ask whether these treatments are effective.
Scientists have strong doubts about the cells’ ability to become new heart tissue, and to provide long-lasting benefit. (See our interview with Christine Mummery on regenerating the heart)

There is much debate on how best to proceed, with some scientists arguing that the most-effective and least risky route is more basic research. Other researchers argue for a more clinical approach; scientists can only learn so much from rodents, and patients have few other treatment options. (Read about this discussion at an NIH meeting on cardiovascular medicine.)

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Hoping to control stem cells at Cold Spring Harbor

The Cold Spring Harbor Symposium this year explored how stem cells are regulated. Five days, over 450 scientists and manuscript editors, and me. I’m drowning in acronyms, my brain is bursting, but I can’t wait for more. Philadelphia, here I come!

Below is my outsider’s notion of trends based on this meeting and two days of visiting scientists in the Big Apple. (It’s a closed meeting, soI’ve included only generalities. I may be able to go back over this in a couple weeks and get more specific)

Here’s the take-home:
There are more niches than we thought, more cell types than we thought, they are regulated in more ways than we thought, and we shouldn’t have been surprised.

Here are more specifics:

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Scientists in ES friendly countries publish more papers; Human cell transplants stop the shivers

I am just back from an amazing meeting in Cold Spring harbor....I've got so many things I want to write about, but here's a couple of several nice things in Cell Stem Cell!

A few mice with a tremor-inducing genetic condition seem to have been almost cured by a transplant of human fetal cells, according to research published in Cell Stem Cell1. Steve Goldman, a neuroscientist at the University of Rochester Medical Center in New York, who led the study, believes it is the first time human cell therapy has rescued a genetic brain disorder. Neurons in so-called 'shiverer' mice do not develop robust protective myelin sheaths; the mice suffer extreme involuntary shaking and die before they are five months old. To try to compensate for this defect, Goldman and his colleagues obtained human glial progenitor cells from aborted fetuses and transplanted them into shiverer mice that lacked functioning immune systems, a trait that enabled them to accept the human cells.
The researchers transplanted 26 newborn mice with 300,000 human cells, inserting them into five sites across the brain. A control set of 59 mice received no treatment, and a second control group of 29 mice received sham injections containing no cells. All the mice developed the shiverer symptoms; seizures were observed by six weeks; by 19 weeks, the mice’s hindlimbs were so weak they could hardly walk. By the end of 23 weeks, all of the control mice and 20 of the 26 treated mice were dead.
The mice that survived, however, regained the ability to walk and stopped getting seizures. Four appeared cured and survived for over a year before they were killed so that their brains could be studied. These autopsies showed that while the neurons themselves were all mouse cells, at least a third of the myelinating cells were human. And these human glial cells myelinated just as many axons as were myelinated in wild-type controls.
Previous transplants of glial progenitor cells had little functional benefit, says Goldman. He thinks this attempt worked because of three improvements: a better way of collecting and purifying the glial progenitor cells; injecting the cells in such a way that more cells were better distributed about the brain; and a better way of preventing rejection of the transplanted cells. The shiverer mouse model could be relevant to a variety of myelin-related brain maladies, including cerebral palsy and Pelizaeus-Merzbacher disease.
Evan Snyder, a neuroscientist at the Burnham Institute in San Diego, California, who has published similar results with mouse cells2, calls the results “very encouraging,” particularly the extensive levels of engraftment. He notes, however, that it’s unclear how the shiverer model relates to human disease, and that overcoming immune rejection could be tricky.
Goldman says his next step is to better define why the treatment works for a few treated mice but not others, and to use that understanding to make the treatment more effective. He says he’s optimistic about one day using such a strategy for human disorders and is currently collaborating with Ian Duncan at the University of Wisconsin in Madison to transplant cells to dogs with a genetic myelin disorder to better understand how the cells disperse in larger animals.

1. Windrem, M. S. et al. Neonatal chimerization with human glial progenitor cells can both remyelinate and rescue the otherwise lethally hypomyelinated shiverer mouse. Cell Stem Cell 2, 553–565 (2008).

2. Yandava, B. D., Billinghurst, L. L. & Snyder, E. Y. "Global" cell replacement is feasible via neural stem cell transplantation: evidence from the dysmyelinated shiverer mouse brain. Proc Natl Acad Sci USA 96, 7029–7034 (1999).

_____

Countries with less restrictive policies for deriving human embryonic stem (ES) cells produce more than their expected share of scientific publications worldwide, according to a study this month in Cell Stem Cell1. By this measure, the United States was the worst performer. Although 36% of scientific publications on human ES cells in 2006 had a US-based researcher as a corresponding author, that was compared to 46% of a control set of biomedical publications and 47% of publications on RNA interference (RNAi), a less controversial 'hot' technology.
To distinguish whether differences in countries' performance were due to the general level of scientific enterprise or to factors specific to the field, Aaron Levine of the Georgia Institute of Technology in Atlanta categorized scientific publications published in 2006 that cited the 1998 paper describing the first derivation of human ES cells, or the initial paper describing RNAi, or one of 50 randomly selected papers published in 1998 that were in the top 1% most-cited papers. Unlike RNAi, human ES cell research is controversial because early-stage human embryos are destroyed to make the cells.
Nine of 16 countries showed significant differences for human ES cell research; four did for RNAi research. Levin notes that governments in the top five overperforming countries (Singapore, the United Kingdom, Israel, China, and Australia) both provide support for the research and permit derivation of new human ES cell lines. Levine believes that specific human ES cell support has paid off, with Singapore having a share of publications on the topic 8.8 times greater than its share of the control set.
“The study chips away at the question but doesn't necessarily take into account a number of other factors,” says Stanford University’s Jennifer McCormick, whose work has also found that the rate of the US publications in human ES cell research was lagging relative to other countries2. For example, the study does not control for the fact that some countries invest more in commercial than academic research or that some countries recognize patents covering human ES cell research and others do not. Also, it’s possible that some of the publications citing the 1998 papers are not limited to only human ES cells or RNAi research. Overall, McCormick says, the study raises very interesting questions, and “policy-makers ought to be keen on having them empirically addressed.”
Besides the United States, other underperformers in Levine’s study included Japan (10% of human ES cell publications compared to 13% of the general control set), France (2.9% versus 5.1%), and Switzerland (0.3% versus 1.5%). Although human ES cell research is legal in the United States and Japan, Levin notes that these countries have had policy debates “forcing scientists to navigate an uncertain policy environment”. Germany and Italy have policies restricting the derivation of lines, and although their share of human ES cell research published was smaller than that in the control set, the difference was not statistically significant.
Both France and Japan also have less than the expected share of RNAi publications, and Levine suggests that science in those countries is less inclined to pursue emerging technologies. China overperformed in both RNAi and human ES cell research, which Levin ascribes to strong economic growth and investment in research. Though the connection between performance and policy is not always clear, the analysis strongly suggests that government policy can significantly help or hinder biomedical research.

1. Levine, A. Identifying under- and overperforming countries in research related to human embryonic stem cells. Cell Stem Cell 2, 521–524 (2008).

2. Owen-Smith, J. & McCormick, J. An international gap in human ES cell research. Nature Biotechnol. 24, 391–392 (2006).

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New York’s strategic plan for stem cells seeks comments

New York put together a draft plan for how to spent $600 million over 11 years to foster stem-cell research and is seeking input through June 20. You can read the plan and leave comments at the link above.

Below, I'll provide the budget breakdown for the plans for New York and the California Institute of Regenerative Medicine.

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