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April 16, 2008

Journal club - Marty Burke

I was particularly struck by a recent paper from the Kozmin group on the mechanism of action of bistramide A. This very interesting natural product demonstrates promising anticancer activity, but is also highly toxic when delivered to mice. Interestingly, two other members of this family of compounds known as bistramides D and K, which both lack an enone moiety that is present in bistramide A, have been shown to be much less toxic while maintaining promising levels of anticancer activity in a mouse xenograft model.

The mechanism of action of this family of natural products has been hotly debated, but a few years ago the Kozmin group identified actin as the potentially therapeutically-relevant cellular target. This hypothesis was strongly supported by this group's recent discovery and high resolution X-ray characterization of a bistramide A/actin complex. However, the mechanistic role, if any, of the conspicuous enone moiety of bistramide A could not be determined from this structure because this portion of the crystal was highly disordered.

In their recent PNAS paper, Kozmin and coworkers harnessed the remarkable efficiency and flexibility of their previously reported total synthesis of this complex natural product to prepare a series of elegantly designed analogs that collectively revealed the criticality of this enone moiety for potent cell-based growth inhibition. Moreover, consistent with the X-ray structure, these studies demonstrated unambiguously that both the spiroketal and amide subunits of bistramide A are required for high-affinity non-covalent interactions with actin that can lead to the severing of actin filaments. Follow-up studies with mass spectroscopy and a synthesized fluorescent analog collectively demonstrated that the enhanced cell-based activity attributed to the enone is due to covalent modification of the target protein, likely via conjugate addition of a cysteine residue. Collectively, these results support a dual mode of action of bistramide A involving the severing of filamentous actin as well as covalent modification of this protein target.

Interestingly, these results reveal a potential explanation for the increased in vivo toxicity of bistramide A relative to its enone-lacking counterparts. The severing of actin filaments (which does not rely on covalent modifications) may be sufficient to inhibit the proliferation of rapidly dividing tumor cells, whereas the dose-limiting toxicity may be caused by enone-mediated covalent modifications of this ubiquitous protein target. This compelling hypothesis remains to be tested, but this paper clearly demonstrates the critical importance of fundamental understanding of small molecule function to guide the search for more effective and less toxic therapeutics. It also represents a striking demonstration of the tremendous power of an efficient and flexible total synthesis of a complex natural product to enable the execution of illuminating experiments that are otherwise simply not possible.

Marty Burke is an assistant professor in the Department of Chemistry at the University of Illinois in Urbana-Champaign. His research focuses on the synthesis and study of small molecules with the capacity to perform higher-order, protein-like functions.

February 16, 2007

What's black and white and read all over?

Hi everybody,

As Stuart mentioned, a bunch of us NPG chemists got together recently to chat about all things related to Nature and chemistry. While we were gathered together, our thoughts naturally turned to the blog, and to brainstorming about different features that could make the Sceptical Chymist more fun and interesting for everyone (Is it possible, you say? Hard to believe, but it's true...). This entry is thus the first to venture forward into new territory. This feature is basically the same as the 'Journal Club' included as part of Nature's Research Highlights, except that we get to pick the scientist, so that's more fun for us. And, more to the point, the online posting means that we can all chime in about the paper, or at least more quickly check it out ourselves through the magic of links. We'll be contacting more of you in the weeks and months to come, but in the meantime, please enjoy this highlight, courtesy of an excellent scientist and all-around nice guy:

Chemically engineered extracts as an alternative source of bioactive natural product-like compounds

by Lopez et al., PNAS 2007, 104, 441-444

Everybody agrees that structurally diverse compound collections are necessary as sources for bioactive molecules. To find new drugs, industrial research seems to particularly enjoy mining synthetic collections using elaborate cheminformatic tools to go and buy the best candidates for testing, a management optimized strategy to shoot for the average while missing the innovative. On the other hand many synthetic chemists favor the view that natural products are the best innovative source of bioactives. Is there anything else in sight, for a change? The report by Lopez et al. on "chemical engineering" of natural product extracts refreshes bioactive discovery in a particularly simple and elegant manner. These authors report an experiment in which a crude natural product extract is reacted with hydrazine to effect chemoselective derivatization of carbonyl groups, which are abundant in natural products, to hydrazones and nitrogen containing heterocycles. In this manner, they create a new brew of compounds which, in contrast to natural products, contains nitrogen rich functional groups that are particularly favorable for bioactivity, thus providing for what Nature had obviously forgotten. This new witch's brew is then tested directly for biactivity to guide isolation of active compounds. In their example, the authors found an antifungal aromatic compound containing a pyrazole group apparently derived from the reaction of hydrazine with a simple flavone. Although the paper is only sketchy about the details, it is a great experiment, which, to my knowledge, is new. With such a simple setup, there is little doubt that many will follow in this path to discover new chemical wonders.

Jean-Louis Reymond

University of Bern

Bern, Switzerland

Catherine (associate editor, Nature Chemical Biology)

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