Voting commences on research prize determined by public poll

It’s an off year in the US election cycle, which means that neither the President nor most members of Congress will face the voters come November. But that doesn’t mean you can’t still cast a ballot this fall. Today, the Brigham and Women’s Hospital (BWH) in Boston announced the finalists for the second annual BRIght Futures Prize, a $100,000 research contest in which the winner is decided by a public poll. Voting is now open through 21 November.

The BWH launched the prize last year in an effort to engage the public-at-large. First, the hospital’s Biomedical Research Institute (BRI) solicited grant proposals from BWH staff on various overarching themes: last year, those were personalized medicine and systems immunology; this year, the topics span the nine featured at the hospital’s ‘research day‘ in November (where the BRIght Futures Prize winner will be announced). Then, the BRI convened peer-review panels to winnow the applicants down to three finalists, each of whom made a short video to pitch their ideas to the public. (See my coverage of last year’s prize: ‘Biomedical grant awarded by ‘American Idol’-style public vote’.)

Last year’s winner was Robert Green, a clinical geneticist at BWH who proposed to sequence the genomes of 480 newborns, half from healthy babies and half from sick babies, in an effort to study how to use that information in routine medical care. Off the back of his BRIght Futures Prize, which served as a sort of pilot grant, earlier this month Green won a $6 million grant from the US National Human Genome Research Institute to roll out his plan in full. (See ‘Scientists to sequence genomes of hundreds of newborns’ from the Nature News blog.)

This year’s finalists include: Utkan Demirci*, a biomedical engineer who aims to advance a point-of-care microfluidic device for detecting levels blood levels of antiepileptic drugs; pharmacoepidemiologist Daniel Solomon and healthcare researcher Joel Weissman, who hope to create an online patient portal to streamline clinical trial enrollment and boost participation; and plastic surgeon Bohdan Pomahač and bioengineer Jeffrey Karp, who propose to develop a new generation of adhesive medical tapes based on biologically-inspired designs. (See my February 2013 news feature about Karp’s investigations of ‘biomimetic’ adhesives: ‘The sticking point’.)

You can watch all the finalists’ videos and read short descriptions of their research proposals here. Check them out, and then exercise your voting right!

*Update: Demirci was named the winner at the BWH Research Day on 21 November.

In wake of Syrian chemical attacks, scientists seek to improve sarin antidotes

US Air Force officers administer a nerve agent autoinjector containing atropine and 2-PAM during a readiness exercise.

US Air Force officers administer a nerve agent autoinjector during a readiness exercise.{credit}US Air Force photo/Staff Sgt. Chrissy FitzGerald{/credit}

In the early hours of 21 August, doctors in Damascus area hospitals scrambled—often in vain—to save the lives of Syrian civilians brought to the hospital with foaming mouths and convulsions. Today, a report released by a United Nations inspection team confirms, as many have suspected, that the chemical weapon used in the attack was the deadly nerve gas sarin.

There are medical countermeasures proven to help counteract the poisoning of sarin and other organophosphate-based nerve agents such as soman and VX—some of which were available last month to Syrian victims. But “they have their limitations,” notes David Jett, director of the Countermeasures Against Chemical Threats (CounterACT) program at the US National Institutes of Health (NIH) in Bethesda, Maryland. Certain drug therapies don’t enter the brain well and none offers protection from the long-term effects of sarin exposure. So scientists have ratcheted up their efforts to improve the arsenal of antidotes against this particular chemical weapon and its lasting impact on the nervous system.

Sarin proves so fatal because it inhibits an enzyme called acetylcholinesterase (AChE). This enzyme normally degrades the neurotransmitter acetylcholine, a key signaling molecule that has numerous functions in the body, including facilitating cognitive function and triggering muscle contraction. Without functioning AChE, muscle fibers twitch uncontrollably and neurons in the brain become hyperactive, leading to seizures. If untreated, people exposed to sarin typically die of asphyxiation, as the muscles involved with breathing proceed to fire nonstop.

More than 1,400 people, including an estimated 426 children, died in the August gas attack, according to US intelligence estimates. Syrian doctors had only limited amounts of antidotes against the nerve gas, according to Sawsan Jabri, a trained physician who teaches biology courses at Oakland Community College in Eastern Michigan and serves as a spokeswoman for the US-based Syrian Expatriates Organization. She says that medical staff around Damascus (with whom she is in contact) had a total of some 50,000 ampoules of atropine, a drug that blocks the receptor responsible for binding acetylcholine, thereby preventing nerve and muscle cells from responding to the neurotransmitter. She adds that they also had “very limited amounts” of both pralidoxime (2-PAM)—a compound that reactivates sarin-inhibited AChE—and the anti-anxiety drug diazepam (better known as Valium), which prevents and treats seizures.

These three medicines—atropine, 2-PAM and diazepam—together constitute the ‘gold standard’ of anti-sarin therapies. As a matter of precaution, US military personnel are equipped with kits that contain spring-loaded syringes full of these antidotes, known as autoinjectors, which allow them to self-administer drugs through the muscle soon after, or better yet, before a chemical attack. But the therapeutic window is small, and prophylactic treatment is typically only feasible for military personnel, not civilians. So government defense agencies have long sought more robust and widely applicable alternatives to limit the death toll and mitigate permanent disability among survivors.

“There is a very vibrant research and development program in this area,” Jett says. He notes that the US government has been funding work in this area since “long before the chemical attacks in Syria, and even before the civilian attacks in Tokyo,” referring to the domestic terrorist attack on the Tokyo subway system in 1995, one of the first-ever uses of sarin as a chemical weapon. “We’re on this.”

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Discovery of gene variant lends muscle to understanding of statins’ side-effects

Statin

The global market for statins has reached heart-stopping proportions, registering at almost $20 billion in 2012. In the US, one out of every four adults over the age of 45 is on statins, making these medications one of the leading types prescribed. The drugs work by lowering the liver’s production of low-density lipoproteins, also known as ‘bad’ cholesterol, which form the artery-clogging plaques that can lead to heart attack. But statins can cause significant side effects, ranging from sleeplessness to an increased risk of type 2 diabetes and potential liver damage.

One of the most common side effects is muscle pain and injury, which afflicts up to 38% of people taking statins. Now, researchers have hit upon a new gene variation that could explain why some individuals are less prone to this type of adverse reaction to such drugs.

The scientists themselves sound surprised at the discovery. “We weren’t focused on finding the cause of the muscle damage,” says Ronald Krauss, director of atherosclerosis research at Children’s Hospital Oakland Research Institute in California and lead author of the new study, which appears online today in Nature. “We were looking at cell lines from patients on statins to discover new gene variants and we found one that affects how the drug works.”

It’s not the first effort to look at statin side effect risks though the lens of genetics. Five years ago, researchers found that individuals on high doses of simvastatin—a statin marketed as Zocor by New Jersey-based Merck—who also carried a specific variant in the SLCO1B1 gene were fifteen times more likely to have muscle pain and injury, also known as myopathy. Based on these findings, which also correlated with markedly higher blood levels of a muscle damage biomarker, the US Food and Drug Administration set new guidelines recommending alternative medications for patients who need more than 40 milligram a day of simvastatin to lower their cholesterol.

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Compound kills drug-resistant tuberculosis through novel mechanism

Tuberculosis is an old disease that demands new drugs. More than one million people die each year from Mycobacterium tuberculosis infections and a growing percentage of new infections—at least 9%—are caused by strains of the bacterium that can’t be killed with many of the drugs now available.

Q203

Q203

A new experimental compound could help. In a paper published online today in Nature Medicine, researchers describe a small molecule called Q203 that thwarts drug resistant tuberculosis infections in mice by targeting the mycobacterial cytochrome bc1 complex—a mechanism distinct from that of existing agents.

“Q203 works in ways [other] drugs do not,” says Kevin Pethe, project head of the antitubercular program at the Institute Pasteur Korea in Gyeonggi-do, who led the study, “and it can work against the resistant bacteria.”

To find the new drug, Pethe and his colleagues screened more than 100,000 different chemical compounds for their ability to inhibit tuberculosis growth in mouse macrophages. They identified 106 molecules that killed the infectious agent without harming the cells. One compound—a kind of imidazopyridine amide (IPA)—stood out for its ability to wipe out drug-resistant strains of tuberculosis isolated from human clinical specimens. The researchers made small changes in the chemical structure of this molecule to derive Q203. They then tested the compound in mice infected with tuberculosis, and observed that animals given Q203 showed fewer lung lesions than those treated with isoniazid, a commonly used first-line anti-tuberculosis agent. Plus, the mice tolerated high doses of Q203 without any noticeable side effects.

To understand how Q203 stopped the bacteria from replicating, Pethe’s team studied six tuberculosis strains that were resistant to the killing power of Q203. By sequencing the genome of these strains, the researchers pinpointed a common mutation affecting the cytochrome bc1 complex, which is involved in energy metabolism. They then measured ATP levels in Q203-sensitive cells and showed that ATP production dropped significantly after treatment with the experimental agent.

The finding that the cytochrome bc1 complex is the primary target of Q203 is consistent with the results of two recent reports showing that IPAs can broadly inhibit energy transduction systems in the tuberculosis pathogen. In one study, a British team from the University of Birmingham and the pharma giant GlaxoSmithKline discovered a series of molecules in this same chemical class directed at the same target, although these compounds were less effective at inhibiting tuberculosis growth as Q203. In the other report, Pethe and his former colleagues at the Novartis Institute for Tropical Diseases in Singapore showed that a panel of 13 different IPA compounds could kill tuberculosis by depleting ATP.

“The IPAs are getting a lot of attention because they are really inexpensive to make, seem to be safe, and work against drug-resistant tuberculosis,” says Marvin Miller, an organic chemist at the University of Notre Dame in South Bend, Indiana, who, together with colleagues at Indiana’s Eli Lilly, reported earlier this year on yet another set of IPAs with promising anti-tuberculosis and pharmacokinetic properties. “They could be very practical.”

Immunologist effort aims to improve hyperlinking of research papers to raw data

TrialShareA study published today in the New England Journal of Medicine reports that people suffering from ANCA-associated vasculitis, a disease in which the body attacks its own defense system, can now be effectively treated with one month of weekly infusions of rituximab, instead of the standard 18-month regimen with daily pills of cyclophosphamide, which has strong side effects. But that is not the only thing that makes the report noteworthy. According to its authors, the study is the first to contain hyperlinked charts or graphs that redirect users to an information-sharing system called TrialShare, where they can instantly access data amassed during this clinical trial and others.

The interactive platform was developed by the Immune Tolerance Network (ITN), a consortium of clinical researchers who study everything from allergies to organ transplants. The ITN is headquartered in Seattle, Washington, and funded by the US National Institute of Allergy and Infectious Disease, in Bethesda, Maryland.

Even without an online version of the article, anyone can sign on to the website, at www.itnTrialShare.org. However, the site is geared toward researchers who want access to information acquired during a study—for example, the twice daily blood pressure readings of patients that a researcher might have reported as an average instead of logging every measurement—which may not have made it into the published paper or supplementary material. Creators of the website emphasize that the information about the patients is anonymized.

This isn’t the first effort to put more information about clinical trials in the hands—and minds—of more people, with the hope of improving the design of future studies and avoiding redundant work. There are some groups, such as the Biomarkers Consortium, based in Bethesda, Maryland, and founded by a combination of private and public agencies that include the US National Institutes of Health (NIH), focused on specific collaborations that only share research data only among their partnership members. TrialShare, by comparison, is now open-access.

Other databases, such as the Gene Expression Omnibus (GEO) run by the NIH’s National Center for Biotechnology Information, act as repositories for data, but they lack the clinical data seen in the TrialShare site.

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Mouse study shows heat shock protein protects against hearing damage caused by common antibiotic

Every drug has the potential to cause side effects. With aminoglycosides, a group of antibiotics that includes those used to treat tuberculosis and other serious infections, hearing loss can affect as many as 20% of people taking the drug. Despite a spate of efforts, there is currently no treatment or prevention for the damage to sensory cells caused by these drugs.

Ear photo

However, in a paper published today, in the Journal of Clinical Investigation, Lisa Cunningham and her colleagues at the US National Institute on Deafness and Other Communication Disorders in Bethesda, Maryland, show that the protective effect of a heat shock protein, HSP70, may provide a new therapeutic option to prevent inner ear cells injury by these antibiotics.

Heat shock proteins (HSPs) are produced by cells in response to stress, such as a sudden spike in temperature. Dubbed ‘molecular chaperones’, HSPs may be best known for their stabilizing role inside cells where they help sort, separate and fold other proteins. But scientists continue to discover the protective role that heat shock proteins can play outside of cells—from activating the body’s defense system to helping repair injured muscle. With a lengthening research record of showing up when cells get injured, HSP70 may be a good therapeutic focus to avert aminoglycoside-induced hair cell death.

“We know diseases can be caused where there is deficient or inadequate chaperone function,” says Rona Giffard, a neuroscientist at Stanford Medical School, in Palo Alto, California. If researchers find a way to increase HSP70 in areas where cells could be harmed, that ability to create a ‘super-response’ may give us ways to support cells that are stressed and unlikely to survive, Giffard says. “We might be able to push cells over the edge, to survival.”

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Gilead under pressure to produce stand-alone version of new HIV drug

TAF_TDF

{credit}National AIDS Treatment Advocacy Project{/credit}

In 2001, the US Food and Drug Administration approved a new HIV medication called tenofovir disoproxil fumarate (TDF). Patient advocates hailed the decision, noting that it represented the first novel antiviral agent to get the green light after the FDA turned down a similar drug  two years earlier. But a lot changes in a decade. For one thing, the maker of TDF, Gilead Sciences of Foster City, California, has a newer, better formulation of tenofovir, called tenofovir alafenamide (TAF). Meanwhile, patient advocates at the International AIDS Society Conference in Kuala Lumpur this week are crying foul that the company isn’t working on a stand-alone version of TAF and plans to sell it only in expensive combination pills.

Currently, TDF is available from Gilead as a solo formulation (sold as Viread). It’s also available as part of Stribild, a fixed-drug combination ‘quad’ pill that also includes the drugs elvitegravir, cobicistat and emtricitabine—the four drugs designated for first-line treatment by the World Health Organization. TAF is currently in development as part of three different combination pills: as a dual-drug tablet with emtricitabine; and in two different combination pills, one of which uses TAF as a substitute for TDF in the currently available ‘quad’ pill, and then in another new single-pill treatment which contains darunavir, cobicistat, and emtricitabine.

Without a stand-alone version of TAF, health programs in poorer parts of the world cannot combine it with cheaper alternatives, such as lamivudine, which works like emtricitabine but, at $37 for a year of treatment, costs about half as much.

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Rwandan model proposed as solution to deadly scourge of counterfeit drugs

The problem of counterfeit drugs has made headlines in recent years with, for example, the discovery of fake versions of the cancer drug Avastin showing up in US hospitals. But the problem is worst in developing countries, where up to 25% of drugs in developing countries are falsified or substandard, according to the World Health organization (WHO).

Some global health advocates say that international players such as the WHO have not outlined sufficiently effective plans to deal with the problem of counterfeit drugs. In an essay published online today in PLOS Medicine, health policy specialists, including the Rwandan Minister of Health, Agnes Binagwaho, review data from 17 countries and suggest that Rwanda, a country once engulfed in conflict, serves as an example of how a committed approach can safeguard drug supplies.

The essay highlights the safety of Rwanda’s tuberculosis drugs, as reported in a March 2013 study published in The International Journal of Tuberculosis and Lung Disease. In that earlier study, researchers posing as local customers visited 19 cities to obtain 713 samples of tuberculosis treatment medications. No active ingredient was found in almost 10% of all the samples. The proportion of counterfeit drugs rose to 17% among medications taken from the 11 African nations in the study. However, no falsified medications came from Rwanda.

The East African nation’s success is founded on the government’s integrated approach, linking health and enforcement agencies to regulatory control, says Amir Attaran, a senior author on the new essay and a health law expert at the University of Ottawa. Some of the stringent steps the Rwandan government takes include giving drug contracts only to manufacturers with current WHO-approved certificates of good manufacturing practices, mandatory inspections of incoming drug shipments and routine sampling of medications. The country’s Ministry of Health drafted guidelines  in 2011 detailing measures to ensure drug quality, such as setting up agency outposts at 469 health centers to the rollout of patient forms for reporting adverse drug events. Rwanda also banned the majority of private pharmacies in the nation from selling tuberculosis drugs, making it easier to control the drug supply chain.

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Researchers question ‘read-through’ mechanism of muscular dystrophy drug ataluren

Ataluren's proposed mechanism of action

Ataluren’s proposed mechanism of action {credit}PTC Therapeutics{/credit}

A drug in clinical trials for muscular dystrophy and cystic fibrosis might not work through the molecular mechanism that scientists think it does. Although the new findings do not cast doubt on the clinical efficacy of the medication, the new experiments suggest that researchers might need to double-check that therapeutics believed to rescue normal protein production by helping parts of the cell ‘read through’ the genetic sequences actually do just that.

The drug in question, ataluren, was developed by New Jersey’s PTC Therapeutics to treat illnesses caused by nonsense mutations such as Duchenne muscular dystrophy, a disease in which disrupted production of dystrophin, a protein critical to muscle structure and stability, leads to progressive muscle deterioration. The drug has also shown clinical benefit in the 10% of cystic fibrosis patients with a mutation in the CFTR gene that causes truncated proteins and has potential for treating other ailments, including hemophilia.

Overall, about 11% of genetic mutations found in inherited diseases involve changes in the code of messenger RNA that prematurely stop protein translation to produce a dysfunctional or nonexistent protein product. But ataluren, formerly known as PTC124, was thought to work by cozying up to parts of the cell known as ribosomes and allowing them to ‘read through’ these errors and continue to make a normal protein.

The developers of ataluren had conducted experiments in human embryonic kidney cells in which the drug succeeded in reading over a mutation and restoring normal production of the enzyme firefly luciferase (FLuc), which causes cells to glow. However, two subsequent reports found evidence that ataluren boosted production of FLuc without assisting the read-through of the code for the enzyme.

In a new study published today in PLoS Biology, researchers ran additional experiments and came across more data placing the read-through mechanism in doubt. Stuart McElroy, a molecular biologist at the Drug Discovery Unit at the University of Dundee, UK, and his team tested ataluren against G418 activity, a well-documented antibiotic read-through agent, in four non-luciferase assays and found in each case that G418 rescued production of proteins but ataluren did not. Researchers also manipulated the sequence of nonsense mutations in another 12 assays and, again, found no measureable effect of read-through activity with ataluren.

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From tumors to tapeworms: parasite’s genome points to new uses for cancer drugs

On the map: Taenia solium

On the map: Taenia solium {credit}Shutterstock{/credit}

Commonly used cancer drugs could be repurposed to help eliminate tapeworm infections, according to the first full genome analysis of the human gut pathogen.

A team led by Matthew Berriman, a geneticist who studies parasites at the Welcome Trust Sanger Institute in Hinxton, UK, sequenced the genomes of three human-infective tapeworm species as well as a fourth tapeworm that lives in the intestines of rats and mice. Their analysis, published online today of Nature found that among more than 1,000 gene products that are predicted to be druggable in the parasite responsible for echinococcosis—a disease that affects an estimated 2–3 million people worldwide—more than 200 already have existing therapies (many in the oncology space) that block them.

“By providing reference genomes for these tapeworms, the study lays the foundation for the identification of new potential drug targets to kill the worms,” says P’ng Loke, a microbiologist at the New York University Langone Medical Center who was not involved in the study.

The cancer link makes sense given the life cycle of the tapeworm, notes Berriman. People typically ingest the parasite as eggs or larvae that then migrate to the host’s intestines where they develop into adult tapeworms. “When larvae infiltrate tissues and organs and cause large proliferating growth, [it’s] like metastasizing cancer,” he says.

The potential for new pharmacological interventions doesn’t end there, though. The genome map also revealed that the tapeworm’s parasitic lifestyle has led to a number of gene losses and molecular simplifications that could provide a wormy Achilles’ heel. Thanks to evolution, for example, tapeworms have lost genes involved in oxidative stress response, making them reliant on just one enzyme for this kind of cell detoxification.

Fortunately, drug repurposing could prove successful here, too. The tapeworm enzyme involved in oxidative stress, called thioredoxin glutathione reductase, is the target of multiple drugs that have been shown to kill blood flukes and flatworms. “We have identified clear vulnerabilities in the pathways the parasites rely on,” Berriman says.