Visualising data with Andy Kirk

Andy-Kirk

Image courtesy of Andy Kirk

Data visualisation has become ever more important as the volume of data is increasing. You see data everywhere, in simple infographics, in the sports reporting and in daily news. We are constantly bombarded with it, and are easily confused by it all. Is it because when we go through our studies as young adults we are only presented with a very small variety of charts? This limitation in our understanding of datasets could be helped by using better visuals.

Andy Kirk, the founder of Visualising Data, is hoping to give scientists a set of tools that will help them to communicate their data in a better way, not only to external audiences, but also to themselves. Being able to visually manipulate data could give scientists a better insight into the stories hidden in their research.

I caught up with Andy at the British Library during one of his workshops. For Andy, it is to do with “how we give a physical form to the subject data variables. Beyond that, it is also all the other presentational factors.” Here, Andy is referring to the aesthetics to create interactivity, this includes simple things like colour and font type. But some of the more complex issues like arrangement, annotations and architecture are also important to consider. These combined factors “make-or-break the success of a visualisation, particularly when it is a communication device.

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Boston Career Expo journalist competition runner-up: David Yang

YangDavid Yang is a recent graduate of Washington University in St. Louis with a Bachelors of Science, majoring in Biomedical Engineering and Electrical Engineering.  He will be applying to medical schools this summer where he intends to focus on mental health and medical engineering.  He is interested in using his writing to reexamine his interests and keep a record of his reflections on mental health activism.

What advice would you give to a friend who is having trouble dealing with a devil-in-disguise boss

She called me two days ago, complaining about her PI. “I watched as he congratulated my lab partner on the work that I did! He won’t listen to me anymore when they tell him that I was the one who put in the hours and the work. Dave [the boss] never answers emails and has been postponing our biweekly meeting for months.” One year into the PhD project and Kate was done. She had an amazing job but a terrible boss, and she didn’t know what to do.

I suppose that’s why she called me. I have a habit of micromanaging my life and weighing up the pros and cons of decisions, it’s just how I work. As this was the first time anyone had asked me for advice on a topic like this, I approached it as I would approach anything: pick up a pen and weigh the situation. Continue reading

Boston Career Expo Journalist competition runner-up: William Kenkel

William-Kenkel

{credit}Pat Lothien {/credit}

Will Kenkel received his PhD in Neuroscience from the University of Illinois at Chicago. His research has focused on the neuropeptide oxytocin and its roles in social behavior and development. In Chicago, Will was a performer at various improv theatres and founding member of the Nerdologues, who combine high reference comedy with heartfelt personal monologues.

A penguin walks through that door right now wearing a sombrero. What does she say and why is he here?

My eyes were all over her the minute she walked through that door.  As she waddled over to the bar, I could just barely make out a pair of ebony eyes from under her sombrero that looked right through me.

“Buy me a drink,” she squawked.

I obliged, telling the barkeep to mix up a canelazo. She seemed pleased with the selection.

“Are you a mind reader?” she asked as she took her first sip.

“Not quite,” I replied, “I just imagined a Galapagos Penguin would appreciate a taste of home.”

“What gave me away?”

I took a swig of my dark-and-stormy, “I’d be lying if I didn’t say the hat, but the flippers helped.” Continue reading

Boston Career Expo Journalist competition runner-up: Casey Doucette

Casey

{credit}Victoria DeMambro{/credit}

Casey Doucette is a PhD candidate at the Maine Medical Center Research Institute. She studies bone biology and chronicles her time in graduate school on her blog, Bonehead Adventures. In her spare time she enjoys playing dodgeball, obstacle course racing, and gardening.

A penguin walks through that door right now wearing a sombrero. What does he say and why is he here?

Penguin Paradox

A 4-foot penguin just walked through the door wearing a sombrero, which is unsurprising considering that I have only had 3 hours of sleep in the past 24 hours. I begin to wonder if I’m hallucinating; perhaps the combination of sleep deprivation and caffeine overload has finally taken its toll.

My new companion warns me to get some rest before I destroy the experiments I’ve been working on for the past two days, but I can’t say that I fully trust his advice, seeing as he’s a talking penguin. Maybe he’s a figment of my imagination; an attempt by my subconscious to convince me that this “one last piece” of data for the abstract won’t make the difference between a poster and an oral presentation.

I start to daydream about the scientific breakthrough that must be behind a talking penguin, only to realise that I’ve lost my place on the 96-well plate I’ve been staring at for the past five minutes. The maze of columns and rows has melted into one giant black hole of reagents and samples. Luckily, my compulsive nature means that my tip box has been keeping track of my progress while I’ve been zoning out. The soothing classical music that’s been playing for the past few hours isn’t helping in this fight for focus, so I switch to something more upbeat.

Since lyrics are distracting, dubstep is essentially the only other option. The synthesised sounds blend together to form an energising mix of futuristic notes and fast-paced beats, and I’m motivated once again. After a flurry of pipetting, the plate is finished and it’s time for incubation; I look up to find that apparently this talking penguin is also a talented dancer. His robotic dance moves are hypnotic, and I find myself staring off into space once again, wondering how I could go about creating talking rodents.

I’m yanked back to reality by the sound of a timer going off, only to realise that I’ve fallen asleep at the bench. My penguin friend has disappeared and I’m relieved to find that this was all just a dream. I decide that I should go home and rest, so I pack up my things and close up shop, barely noticing the sombrero hanging from the door handle as I leave.

Find out more about the conference delegates, exhibitors and workshop sessions at the Naturejobs Career Expo in Boston here, and you can follow the action on Twitter using the #NJCEBoston hashtag.

Boston Career Expo Journalist competition runner-up: Tracy Wang

TraceyTracy Wang is a recent graduate of McGill University with a Bachelor of Arts and Science, majoring in Cell and Molecular Biology and also gaining a double minor in English Literature and Economics. She will be starting a Masters of Public Policy at the University of Toronto in the fall where she intends to focus on health policy.  She is passionate about using her writing to bridge the divide between arts and science and is currently working on several projects, including a short story collection.

A penguin walks through that door right now wearing a sombrero. What does he say and why is he here?

As I gently load my sample into the transmission electron microscope, I am hoping that this will be the last time I ever have to use this frustrating machine. The vacuum hisses, signalling that the scope is ready to use, a fitting reminder of how soulless this room is. With the lights off, I am drowning in darkness until the scope recognises the sample and my monitors turn on. I used to love using the scope and the excitement of seeing subcellular components in such fine detail, but getting all the data to complete my thesis has been a taxing process. I just want it to be over.

I slip into scanning mode and look for a cell to image, but a voice interrupts my search.

“What’s that?”

I turn to see a stuffed toy penguin wearing a sombrero, pointing his flipper at my computer screen. “That, there, what is it?”

While I am reluctant to acknowledge the impossibility of a talking toy penguin, I decide that conversation might make my work less banal. “That’s a cell.”

“What does that mean?”

“Well, cells are the basic unit of life. All living things are made of cells.” Continue reading