{"id":458,"date":"2013-09-19T13:41:03","date_gmt":"2013-09-19T13:41:03","guid":{"rendered":"https:\/\/blogs.nature.com\/scientificdata\/?p=458"},"modified":"2015-12-17T14:34:20","modified_gmt":"2015-12-17T14:34:20","slug":"the-data-descriptor-making-your-data-reusable","status":"publish","type":"post","link":"https:\/\/blogs.nature.com\/scientificdata\/2013\/09\/19\/the-data-descriptor-making-your-data-reusable\/","title":{"rendered":"The Data Descriptor \u2013 making your data reusable"},"content":{"rendered":"<p><i>Scientific<\/i> <i>Data<\/i>\u2019s call for submissions is fast approaching, and accepted manuscripts will be featured at our platform\u2019s launch in Spring 2014. We hope you\u2019ll want to take part!<\/p>\n<p>If you\u2019re interested in publishing your datasets\u2014and getting credit for them\u2014all the information you need to draft and submit a manuscript is now available on <a href=\"https:\/\/www.nature.com\/scientificdata\/\">our website <\/a>(See Box 1, \u201cGetting ready to submit\u201d).<\/p>\n<p><!--more--><\/p>\n<p>But if you\u2019re still deciding whether\u00a0<i>Scientific Data<\/i>\u00a0is right for you, let\u2019s begin with an explanation of why we need quality data publications, and the role that\u00a0<i>Scientific Data<\/i>\u2019s\u00a0content will play in promoting data reuse<i>.<\/i><\/p>\n<div style=\"background-color: lightgrey;border: medium solid black;margin-left: 8px;padding: 0px 0px 0px 20px;float: right;width: 55%\">\n<h3 style=\"text-align: left\">Box 1. Getting ready to submit<\/h3>\n<p style=\"text-align: left\">Simply follow these three steps:<\/p>\n<ol style=\"text-align: left\">\n<li>Deposit your data to <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/data-deposition-policies\/\">an appropriate repository.<\/a><\/li>\n<li>Draft the Data Descriptor manuscript. See our <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/submission-guidelines\/#templates\">manuscript templates<\/a> and <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/sample-data-descriptors\/\">sample Data Descriptors.<\/a><\/li>\n<li>Draft some tables describing your samples, assays, and data outputs. See our <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/submission-guidelines\/#metadata\">guidelines<\/a> and <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/submission-guidelines\/#templates\">templates<\/a>.<\/li>\n<\/ol>\n<\/div>\n<p><b>Have you come across interesting datasets that you couldn\u2019t reuse, or where it was difficult even to judge the data\u2019s technical quality?<\/b><\/p>\n<p>Incomplete and fragmented descriptions are often the culprit; information about the experimental context and data processing steps may be limited or inaccurate. Even in the best scenario, when datasets are in public databases and supported by published journal articles, it can be challenging to identify and bring together all the information needed to reuse the data.\u00a0The level of annotation provided for each dataset record can also vary from database to database. Moreover, research articles associated with a given dataset focus primarily on the interpretation of the data in light of a specific hypothesis, and cross-referencing between related database records and journal articles is still performed in an\u00a0<i>ad hoc<\/i>\u00a0fashion\u2014meaning that the true reuse potential of even publicly deposited datasets may actually be limited.<\/p>\n<p><b>How does\u00a0<i>Scientific Data<\/i>\u00a0help you maximize discovery, citations and reusability of your data?<\/b><\/p>\n<p>Our new content type, the\u00a0<b>Data Descriptor<\/b>, is designed to provide detailed descriptions of life sciences, biomedical and environmental datasets: focusing exclusively on how these have been produced, by whom, and how they could be reused by independent investigators. Data Descriptors combine traditional\u00a0<i>narrative\u00a0<\/i>content (the manuscript) with\u00a0<i>structured\u00a0<\/i>information (the experimental metadata; see Box 2, \u201cThe Data Descriptor\u201d, for more information). Published Data Descriptors will link out to both related journal articles and data files stored at data repositories. The\u00a0<i>structured<\/i>\u00a0information will be harmonized by our in-house curators for consistency and to aid searches. In the end, Data Descriptors will be an important bridge in the existing scientific information ecosystem between results-based research and data outputs, and will include value-added elements that serve both human and machine consumption.<\/p>\n<div style=\"background-color: lightgrey;border: medium solid black;margin-left: 8px;padding: 0px 0px 0px 20px;float: right;width: 55%\">\n<h3 style=\"text-align: left\">Box 2. The Data Descriptor<\/h3>\n<p style=\"text-align: left\">Each published Data Descriptor will contain:<\/p>\n<ul>\n<li style=\"text-align: left\"><em>Narrative<\/em> content similar to that in a primary research article, including text sections, figures and tables, designed to enable others to interpret and reuse data, and all formatted for easy readability.<\/li>\n<li style=\"text-align: left\">A <em>structured<\/em> metadata component, providing specifics on samples or subjects and the methodological steps involved in generating and assaying them, and links to the publicly archived raw or processed data, provided in machine-readable formats that suit data users.<\/li>\n<\/ul>\n<\/div>\n<p><b>How can you create a Data Descriptor for submission to\u00a0<i>Scientific Data<\/i>?<\/b><\/p>\n<p>We\u2019ve created two templates that will help you draft an initial submission that meets our editorial requirements.<\/p>\n<p>The\u00a0<b>first template<\/b>\u00a0helps you create the\u00a0<b>Data Descriptor manuscript<\/b>, the\u00a0<i>narrative component<\/i>\u00a0that maintains a more traditional article layout, with familiar text sections\u2014Title, Abstract, Background &amp; Summary, Methods\u2014supported by figures and tables. The Methods section has no length limit, allowing researchers to provide enough detail for others to reproduce the experiments and data-processing steps.\u00a0 We are also introducing new sections\u2014entitled \u201cTechnical Validation\u201d, \u201cData Records\u201d and \u201cUsage Notes\u201d\u2014that are designed to provide important information supporting data quality and reusability, information that is often not included in traditional articles.<\/p>\n<p>As part of the Data Descriptor manuscript, we will ask authors to provide detailed information accounting for all samples employed in the study, the assays applied to the samples, and the resulting data outputs. To help authors here, we\u2019ve provided a\u00a0<b>second\u00a0template<\/b>\u2014a spreadsheet\u2014to help you compile this information. The format of this template is designed to make it easy to incorporate this information into the\u00a0<b>Data Descriptor experimental metadata<\/b>, the\u00a0<i>structured component.\u00a0<\/i>This will contain information on samples or subjects used in the study, the methodological steps involved in deriving the samples from their source, the assays performed\u2014and links to the corresponding data files in public databases.<\/p>\n<p>More information on submitting a manuscript to<i>\u00a0Scientific Data<\/i>\u00a0can be found in our <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\">guide to authors<\/a> and our <a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/submission-guidelines\">submission guidelines<\/a>. We also encourage prospective authors to look at the two\u00a0<a href=\"https:\/\/www.nature.com\/scientificdata\/for-authors\/sample-data-descriptors\/\">sample Data Descriptors<\/a>\u00a0recently released on the\u00a0<i>Scientific Data<\/i>\u00a0website, and the related\u00a0<a href=\"https:\/\/blogs.nature.com\/scientificdata\/2013\/09\/11\/scientific-data-releases-two-sample-data-descriptors\/\">blog post<\/a>.<\/p>\n<p><b>What is\u00a0<i>Scientific Data\u2019s<\/i>\u00a0value-added process for accepted Data Descriptors?<\/b><\/p>\n<p>For initial submissions, authors are asked to create a Data Descriptor manuscript and upload it via our online submission system, along with related supplementary files. Peer-review will then be managed by our growing\u00a0<a href=\"https:\/\/www.nature.com\/scientificdata\/about\/advisory-and-editorial-board\/\">Editorial Board<\/a>, according to\u00a0<a href=\"https:\/\/blogs.nature.com\/scientificdata\/2013\/08\/15\/scientific-datas-editorial-policies-and-guide-to-referees\/\">our editorial policies<\/a>.\u00a0 When a Data Descriptor is ultimately accepted for publication, the curator will help authors create the experimental metadata component of the Data Descriptor. \u00a0This information is curated for consistency; for example, free text values are replaced with ontology terms, and additional experimental information is elicited from the narrative template and used to enrich this structured component. This harmonized and enriched structured component of the Data Descriptor will power searches and aid navigation across records in\u00a0<i>Scientific Data<\/i>\u00a0and beyond, via the Nature.com platform. Data Descriptors\u2019 experimental metadata will initially be available for download in the\u00a0<a href=\"https:\/\/www.nature.com\/scientificdata\/about\/partners\/\">ISA-Tab format<\/a>, and will be available in other formats, such as Linked Data, in the future. Our curation process will scale up progressively as we\u00a0<a href=\"https:\/\/blogs.nature.com\/scientificdata\/2013\/05\/13\/our-roadmap-to-engagement-your-call\/\">continue to engage with community standards<\/a>\u00a0and work collaboratively to meet the minimal information requirements in various disciplines.<\/p>\n<p><b>Are you an advanced user or a data service provider interested in supplying metadata directly to\u00a0<i>Scientific Data<\/i>?<\/b><\/p>\n<p>The Data Descriptor experimental metadata component can also be submitted directly as an ISA-Tab file. Providing detailed metadata directly will speed the time to publication and allow you to include more detailed experimental information in the metadata record. We are eager to work with service providers and data repositories that want to support researchers by providing ISA-Tab formatted metadata export.<\/p>\n<p>If you are an existing ISA user, or are interested in developing an ISA-Tab export from your data service, we are in the process of releasing a detailed ISA configuration file that meets\u00a0<i>Scientific Data\u2019s<\/i>\u00a0requirements. Therefore \u2026 watch this space!<\/p>\n<p>We look forward to receiving your Data Descriptor submissions\u2014please contact us at <a href=\"mailto:scientificdata@nature.com\">scientificdata@nature.com<\/a> with any questions.<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientific Data\u2019s call for submissions is fast approaching, and accepted manuscripts will be featured at our platform\u2019s launch in Spring 2014. We hope you\u2019ll want to take part!&nbsp; <a href=\"https:\/\/blogs.nature.com\/scientificdata\/2013\/09\/19\/the-data-descriptor-making-your-data-reusable#more-458\" class=\"more-link\">Read more<\/a> <a href=\"https:\/\/blogs.nature.com\/scientificdata\/2013\/09\/19\/the-data-descriptor-making-your-data-reusable\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":26280,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[5,8,27],"tags":[],"class_list":["post-458","post","type-post","status-publish","format-standard","hentry","category-editor-posts-2","category-featured","category-metadata"],"_links":{"self":[{"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/posts\/458","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/users\/26280"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/comments?post=458"}],"version-history":[{"count":0,"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/posts\/458\/revisions"}],"wp:attachment":[{"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/media?parent=458"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/categories?post=458"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blogs.nature.com\/scientificdata\/wp-json\/wp\/v2\/tags?post=458"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}