The Seven Stones

Semantic zooming of networks

One can only agree with Euan Adie, that “the way we present genomic and proteomic data on the web sucks” (read post on Nascent). And this holds for biological networks: depiction of protein-protein interactions as colorful hairballs results in impressive figures but is not obligatorily very useful. While the network representation is a powerful abstract representation of biological processes, it is trivial to say that a graph (with its jungle of nodes and edges) is far from resembling even remotely to an actual living cell as you see it under the microscope… In the crude visualization of biological process as simple graphs, space, time, multi-scale structure and biological context are missing. 


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