Scientific American’s open web experiment

Scientific American is undertaking a social web experiment in its article Science 2.0: Great New Tool, or Great Risk?, by M. Mitchell Waldrop (article dated 9 January 2008). The article addresses whether wikis, blogs and other collaborative web technologies are the start of a “new era of science”. The article itself, however, is a draft: not yet formally published in the magazine, the author encourages readers to comment on it before he revises it for final publication.

In the draft article, scientists and scientific publishers provide their views of collaborative science, in which researchers are posting drafts, preprints and other information online before formal publication of their work, and soliciting comments from fellow-scientists and other readers. But is “using blogs and social networks for your serious work….. an open invitation to have your online lab notebooks vandalized—or worse, have your best ideas stolen and published by a rival?” Or does competition turn into cooperation?

Issues of due credit and scooping are clearly uppermost in the minds of many who are nervous about such projects. This is countered by Jean-Claude Bradley’s Open Notebook system, in which “everything goes online: experimental protocols, successful outcomes, failed attempts, even discussions of papers being prepared for publication……. The time-stamps on every entry not only establish priority, but allow anyone to track the contributions of every person, even in a large collaboration.”

There are more than 70 comments from readers to the draft article at time of writing this post (17 January), many of them related to accreditation, priority, trustworthiness, and filtering, all central to the concept of peer review. One example, from a pseudonymous commenter: “there is a rather less savoury side to Web 2.0 as well. You just need to look at the scorn recently and unjustifiably heaped upon one surfing physicist for having the temerity to suggest that string theory might not be the only way of looking at the universe, and weblogs were the primary conduit for that scorn.”

Thomas Lemberger adds his view: "Are we not going to be submerged by this avalanche of details, data, preliminary results? Who manages to keep up even with the classical “science 1.0” literature? Who manages to keep up with the hundreds of blog RSS feeds? How can the relevant information be retrieved, aggregated and evaluated in this ocean of data?" Here is Jim Morris’s view: “It’s already standard for many scientists to put their draft papers on their web sites. This is a more plausible if less amazing practice than putting lab notebooks online. Why not build on that to build online journals that start from those drafts to produce well-refereed papers?”

There are many more comments on the article, but perhaps the last word goes to another pseudonymous entry: “This whole argument reminds me of what you’d read in articles about Linux five to ten years ago. Open source was supposedly the future, and soon to replace Windows on the desktop. Well, the rest of the world outside of the enthusiasts couldn’t be bothered. They had work to do, and didn’t have the massive amounts of time required by such things (and the tools discussed here are huge time sinks)…… Often it can take months, if not years, to realize the true significance of your data. I worked with a mouse mutant where it took us over a year to figure out the cause of death. Putting your raw data out, before you have figured it out thoroughly, is just asking for someone else to make that leap instead of you.”

Nature Precedings is live

Nature Precedings is now out of “beta testing” and is launched. This new community service is described at Nautilus, the NPG blog for present and future authors. Submissions are screened by our professional curation team for relevance and quality, but are not subjected to peer review. High-quality contributions from biology, medicine (except clinical trials), chemistry and the Earth sciences are welcomed.

More details about Nature Precedings can be found here. Because they have not been peer-reviewed, many of the findings you read at Nature Precedings may be preliminary or speculative, and remain to be confirmed. Please bear this in mind when deciding how seriously to take them.

Submissions are not accepted from fields in the physical sciences that are are already well served by preprint servers such as arXiv.org. Content that considered to be non-scientific or pseudoscientific is rejected. We accept only genuine contributions from qualified scientists. This will usually require submitters to have a recognized academic affiliation. Incomplete submissions will also be rejected. This is a free service, so please help us to help you by completing all relevant sections of the submission form.

The reactions of scientists and publications to the launch of Nature Precedings can be found at this Connotea page, which is regularly updated. Here are one or two such articles:

Nature Precedings pre-print server for biomedical research

Nature Precedings: A nicer version of ArXiv[e] for biomedical research

Chemistry Central: A new preprint server from Nature.

New data at conferences, please

New data, please, is the plea in this month’s Editorial in Nature Structural & Molecular Biology (14, 457; 2007). Some highlights:

The summer conference season is already in full swing. One of the great things about being a journal editor is the opportunity to go to different meetings (hopefully at beautiful locales), meet different people and learn about exciting new research. But this doesn’t always happen — at least the part about seeing new research presented.

As editors, we are continually looking for the latest and most groundbreaking research, in the hope that we will be able to publish such work in our journal pages. As scientists, we are constantly looking to expand our knowledge into new areas and keep pace with the fields of research we are interested in. This is the main reason for us to attend meetings and conferences (and part of why we became editors in the first place).

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We understand that a lot of the hesitation about presenting a laboratory’s most recent results may come from fear of being scooped. It is surprising, though, how much ownership comes with being the first to present a finding. In fact, the amount of discussion new results generate can be an indicator of how well received they will be when finally sent to peer review, since the question-and-answer session that follows the presentation can itself be viewed as an open review process. An advantage to this is that any problems or oversights may be caught ahead of time by the very same group of colleagues who will probably be involved in formal assessment of the results submitted for publication.

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Whether it is in the form of a talk, a poster session or a high-profile publication, we are all here to learn and share what we know. It would be good if more scientists took advantage of the expertise gathered at the various meetings they attend by presenting their latest and greatest.

The complete text of the Editorial is available here (subscription or site licence required).