The human genome ten years on, and introducing the News&Views forum

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The draft human genome sequence, announced with much fanfare in 2000, promised great insights into human biology, medicine and evolution. In a special in this week’s issue, whose content is free to read online, Nature asks whether the sequence has delivered the insights that were anticipated, and what lessons have been learned from the first post-genome decade. Human genetics in 2010 looks infinitely more complex, and questions about how to make sense of the explosion in biological data are only becoming more pressing. Read articles in Editorial, Features, Opinion (including articles by Robert Weinberg, by Craig Venter and by Francis Collins), Books & Arts, and News & Views, listen to our podcast and see past Nature collections.

What did the human genome mean to you? The availability of the human genome sequence shaped scientists’ lives and research in ways they could not have predicted. Help Nature gauge the impact of the sequence by taking part in a brief survey.

I’d like to highlight here Nature ’s Cell biology forum in the News & Views section: Genome-wide view of mitosis, in which Jason R. Swedlow on the one hand, and Cecilia Cotta-Ramusino with Stephen J. Elledge on the other, provide two complementary views on a paper in this issue of Nature describing an exceptionally large-scale project aimed at assigning function to all protein-coding genes in the human genome. This forum, in common with all other articles in this issue and all other issues of Nature, is open for your comments online. We look forward to reading what you think.

Nature’s collection on biodiversity

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Nature presents a supplement on biodiversity, in this International Year of Biodiversity. As nations come together to reduce the alarming loss of species taking place worldwide, we hope that these features, opinion pieces, News & Views articles and original research papers will provide a useful snapshot of the problems faced and solutions proposed. All the articles in this supplement are free to read online for six months from the publication date, and a free print copy can be requested.

From the supplement’s Editorial: "The rich variety of the natural world that Charles Darwin memorably imagined as an “entangled bank”, and that E. O. Wilson labelled “biodiversity”, is in crisis. The International Union for Conservation of Nature (IUCN) calculates that one-fifth of mammals and nearly one-third of amphibians are threatened with extinction. Some estimate that only half of the species alive today will survive to 2100. Others describe the pace of biodiversity loss as 100 times the rate of natural extinctions. Less-diverse ecosystems are less productive, less stable and less robust. So loss of biodiversity may weaken ecosystems and make them more fragile, especially in the face of climate change, with grave consequences for food security, among other things.

This year, therefore, has been designated the International Year of Biodiversity (IYB) by the United Nations General Assembly. Throughout the year, evolutionary biologists, ecologists, conservationists, policy makers and communicators will be negotiating how best to reduce the rate of loss of biodiversity.

As a contribution to IYB, this collection of reported features, expert opinion pieces, News and Views articles and original research papers published recently in Nature provides a useful snapshot of the complexity of the biodiversity problem, and the solutions proposed and tried."

Other Nature collections.

Synthetic systems biology, ten years on

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Synthetic biology goes beyond classic genetic engineering as it attempts to engineer living systems to perform new functions not found in nature. Ten years ago, Nature published a pair of seminal papers that stimulated ‘systems biology’ thinking in the field. The journal has now collected these papers, together with other, more recently published articles and an accompanying free podcast and video, as a web focus on ‘Synthetic systems biology’.

The collection includes a News Feature ‘Bioengineering: Five hard truths for synthetic biology’ (Nature 463, 288–290; 21 January 2010), which is free to access online. In this News Feature, Nature asks whether engineering approaches can tame the complexity of living systems by exploring five challenges for the field and how they might be resolved.

Also in the focus is a free online Editorial from Nature, ‘Ten years of synergy’ (Nature 463, 269-270; 21 January 2010), which suggests that contributions to and from basic science are the part of synthetic biology that most deserves celebration. In an accompanying podcast, one of Nature’s biology editors, Tanguy Chouard, discusses toggle switches, flashing colonies of bacteria and the challenges ahead for synthetic biology. And you can see a Nature video of synchronizing bacteria.

For these and other Nature articles on synthetic biology (commissioned editorials and original research papers), please visit the web focus.

MicroRNA collection at Nature

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MicroRNAs (miRNAs) are small, non–coding RNAs found in plants and animals. They regulate gene expression by binding to complementary sequences within target mRNAs. The mammalian genome encodes hundreds of miRNAs that collectively affect the expression of about one–third of all genes. This collection showcases the latest papers from Nature that explore the biogenesis, biological effects in both normal and diseased cells, and therapeutic potential of miRNAs. Read the collection free online for 3 months after the publication date, and request a sample copy at the Nature website.

Senior Nature editor Angela Eggleston writes in the collection’s Editorial: "The ability of miRNAs to modulate gene expression makes them an attractive target for therapeutic development. Proof-of-concept studies in non-human primates, using ever-improved delivery vehicles, have paved the way for the first human trials involving miRNA drugs. With the ubiquitous impact of miRNAs on cell proliferation and development, these collected articles can provide only the merest hint of the miRNA landscape. As geneticists used to proclaim “the awesome power of yeast genetics”, I think many would acknowledge that we are approaching an era dominated by “the awesome power of miRNAs”. "

Request your free copy of the Nature MicroRNA collection.

More Nature collections.

Nature Medicine’s year in review

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In keeping with the journal’s annual tradition, the December issue of Nature Medicine takes a look back at the key developments in biomedicine during 2009.

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Behind the news, there are always the newsmakers. Inspired by the high school yearbook tradition, we have rounded up a few such individuals worthy of notice in 2009. Some stepped into the spotlight eagerly, whereas others operated behind the scenes. Melinda Wenner reports.

Notable advances

Melinda Wenner highlights some of the key papers published in 2009, including topics such as lifespan, T-cell immunity, hepatitis C, HIV, microRNA, Alzheimer’s disease, tuberculosis, cardiology and RNA interference.

Timeline of events provides a brief history of what made news this year, from January, when a woman gave birth to the first baby to have ever been screened before conception for the cancer-causing BRCA1 mutation, to October’s conviction of South Korean stem-cell scientist Woo Suk Hwang for embezzlement and bioethical violations.

2009 by the numbers provides a 360-degree accounting of the ’flu felt around the world.

Drugs in the headlines

This year witnessed both surprising successes and unexpected failures in basic and clinical drug development. There were also mixed results for some newly tested drugs, which will probably prompt a careful reassessment of their therapeutic value. Nature Medicine s drug watch compilation, by Victoria Aranda, summarizes the most talked about therapies of the year.

In case you missed it

A look at stories that fell under the radar in 2009.

Nature Medicine’s year in review

Nature Medicine website.

Happy tenth birthday to Nature Cell Biology

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Nature Cell Biology was launched ten years ago to provide a forum to “foster the exchange of ideas between all areas of cell biology”, and the Editorial in the current issue reflects on how cell biology has evolved during this time (11, 1389-1390; 2009). “The journal’s ”https://dx.doi.org/10.1038/8948">first editorial noted that cell biology is a “broad discipline” that includes membrane traffic, cytoskeletal dynamics, adhesion, apoptosis, cell division, nuclear organization and signal transduction. Ten years later, these areas remain at the heart of the journal’s scope. As cell and developmental biologists have moved to dissect biological processes at the molecular and cellular level, so too have molecular biologists increasingly investigated ‘where’ and ‘when’ molecular processes occur in the cell. Nature Cell Biology has vigorously kept apace with these fundamental shifts in the field. In the past decade, the rate of discovery in cell biology has been driven by technological breakthroughs on various fronts — imaging and high-throughput genomic and proteomic approaches, to name a few — and these changes too are reflected in our pages. To mark this anniversary, we have assembled a collection of papers published over the past decade, spanning the diverse subject areas covered by the journal." The papers are representative of the journal’s scope and quality, but the list is not intended to be comprehensive.

Focus: A decade of Nature Cell Biology.

Poster on the rise of p53 at Nature Reviews

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Nature Reviews Cancer and Nature Reviews Molecular Cell Biology present a free poster on the rise of p53, by Bert Vogelstein and Carol Prives. “In 1979 the discovery of p53 was reported. The gene encoding p53 (TP53) was initially believed to be an oncogene but 10 years later it was correctly characterized as a tumour suppressor, which led to a steep rise in p53 research. We now know that the protein encoded by TP53 — one of the most commonly mutated tumour suppressor genes in human cancer — regulates many important biological activities and is itself regulated through post-translational modifications that are induced by sensors of cell stress. This Poster highlights some of the key discoveries from the past 30 years that have led to our current understanding of p53 biology and complements the ”https://www.nature.com/nrc/focus/p53/index.html">Nature Reviews Cancer Focus on p53 – 30 years on, comprised of articles that reflect the history and the emerging directions of p53 in cancer research."

The rise of p53: download poster and view timeline.

View/download a high-resolution PDF of the poster.

Nature celebrates 150 years of On The Origin of Species

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Nature‘s year-long celebration of Charles Darwin’s life and achievements continues in the current (19 November) issue, marking the anniversary of the publication of On The Origin Of Species 150 years ago, with a special issue on biodiversity, focusing on the dire challenges to Earth’s biodiversity — and finding some reason for hope. The Darwin-related content from this issue, plus further discussion on this week’s free Nature Podcast, can all be accessed within the journal’s Darwin 200 special, an extensive collection of news, research and analysis commemorating Darwin’s life, his science and his legacy.

In this week’s biodiversity special issue, as nations prepare progress reports on their pact to reduce the rate of loss of biodiversity by 2010, the International Year of Biodiversity, Pavan Sukhdev urges governments to secure the flows of nature’s ‘public goods’. Meanwhile, William R. Turner and colleagues argue that natural ecosystems be made a bulwark against climate change, Robert J. Smith and colleagues propose that local agencies need to set the conservation research agenda and Douglas Erwin calls upon paleontologists to create models of the root causes of biodiversity. These three Opinion articles are free to read online for one month from the issue date of 19 November. In addition, News Features examine Brazil’s forests and species barcodes, and there’s a profile of ecosystem services advocate Gretchen Daily.

Free to access online is this week’s Editorial, The entangled bank unravels, examining some of the most pressing issues concerning the loss of biodiversity.

Nature‘s free podcast this week features three of the authors of the Opinion articles in this week’s issue, discussing the influence of Darwin on their work and disciplines.

Nature‘s Darwin special, from which the journal’s three special issues during 2009, as well as a host of other related content, can be accessed.

NPG Darwin celebration: in celebration of Darwin 200, NPG journals have commissioned and collected content showcasing how Darwin’s seminal work and ideas have enriched and transformed diverse disciplines.

Nature reprint collection: immuno-epigentics

Epigenetic mechanisms are increasingly appreciated to have an important role in immune cell functional diversity and adaptability, and understanding these mechanisms holds considerable potential for revealing new opportunities to therapeutically modulate the immune response in a range of diseases.

This Nature Reprint Collection provides a compilation of some of the research papers that have contributed to the advances in the field of immune cell epigenetics, as well as reviews discussing aspects of this new and exciting field. The collection brings together articles from Nature, Nature Immunology, Nature Reviews Immunology and Nature Reviews Drug Discovery that have contributed to advances and discussions in the field of immune cell epigenetics.

The articles in this collection are freely available online until 30 April 2010.

More Nature Collections.

Nature Immunology supplements and focuses.

See also: Epigenetic Dynamics in the Immune System, a conference organized by Nature Immunology and Nature Reviews Molecular Cell Biology, 19 February 2010 in San Antonio, Texas.

Nature Medicine classics collection

In 2010, Nature Medicine will celebrate 15 years as the leading translational-research journal. To mark this anniversary, the journal has launched the Nature Medicine Classics Collection. This collection brings together some landmark articles published in Nature Medicine over the past 15 years, making them freely available to all readers together with a series of recent articles on different fields of biomedicine to illustrate the breadth of the journal.

The Nature Medicine editors write: Since 1995, our journal has been at the forefront of publishing translational medicine, way before the term was even coined. Our focus on publishing basic and preclinical work that has direct relevance to human disease has been a key characteristic of Nature Medicine that has helped establish the reputation of the journal in the translational research landscape.

To put together this sampler, we have chosen a series of recent articles from our pages, organized them by therapeutic area, and made them freely available in order to give you a glimpse of the breadth of Nature Medicine’s coverage, as well as the quality of the science we publish.

In addition, we have chosen a few landmark articles that we had the privilege to publish over the past 15 years in an effort to illustrate why Nature Medicine is the home of translational research.

Nature Medicine Classics Collection by subject:

Classic articles

Cancer

Cardiovascular disease

Immunology

Infectious diseases

Metabolism

Neuroscience

See also:

Nature Medicine‘s free podcast.

Journal press releases.

Spoonful of Medicine, the journal’s blog.