NSMB’s tips for revising your paper in response to reviewers

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From: Nature Structural & Molecular Biology 17, 389 (2010)

Your paper went out to review, and after anxious waiting, you receive the letter asking for a revised paper. However, those ever-demanding editors and reviewers want more. One of the most important elements of a revision is the point-by-point response. Here are some tips for making it more effective.

Keep to the point. We [the NSMB editors] internally call this a point-by-point rather than a rebuttal, implying that it makes a series of points in response to each point raised by the reviewers. We will, and indeed have, read through 17-page point-by-points. But the longer the document gets, the more likely it is that the essence of your arguments will be lost in the mix.

Keep it objective. We have received comments from bewildered reviewers who do not understand why the tone of the point-by-point is so aggressive. Therefore, we will sometimes ask you to rewrite your response if it is overly pugnacious and we feel that this could affect the outcome of the review.

Keep things under control. There are definitely times for making a logical argument rather than adding new data and experimentation. That said, when fundamental technical concerns are raised or missing controls are being requested, the point-by-point is not the place for trying to dazzle your reviewers with argument and debate skills. Know when to go to the bench and when to argue.

The scope of things. Some requests might genuinely be beyond the scope of the manuscript or might simply be unfeasible. Make your response here as objective as possible. Say clearly and succinctly if something is unfeasible or if you think the results of such an experiment would be uninterpretable, and in both cases explain clearly why (pointing to the literature if needed) and how long the experiment will take to help make the case.

Some final points. There are some don’ts that should be obvious; but just in case, here are a few, in no particular order:

Telling us about your reputation, your pedigree, number of citations of your previous papers, your h-index, other Nature journals you have recently published in, etc. All interesting information but not pertinent to deciding the fate of the paper at hand.

Celebrity endorsements. Letting us know that a Nobel laureate enjoyed your talk at a recent meeting. Good to know but relatively meaningless. In fact, you never know—they could be moonlighting as your most critical anonymous reviewer.

Trying to guess who the reviewers are and then launching into a diatribe about their qualifications (or lack thereof).

And finally: “You recently published an even worse paper.”

All of these can be amusing to varying degrees but will do little to further your case.

Overall, it can be helpful to put yourself in the reviewer’s shoes and compose a response s/he would find appropriate, where the concerns raised are considered and fully addressed. In its ideal state, the review process is a positive and constructive back and forth, an intellectual discussion in which the manuscript is the ultimate beneficiary. Although it can be frustrating to be told at this stage that further revisions and experiments are a condition for publication of work that you felt was complete enough to submit, a common refrain after publication is for authors to express that, with the benefit of hindsight, the review process strengthened the paper. And a strengthened paper submitted at revision is the strongest rebuttal of all.

Editors’ advice on writing scientific papers

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Nature Structural & Molecular Biology (17, 139 ;2010) provides some writing advice for scientists: “less is more when it comes to writing a good scientific paper. Tell a story in clear, simple language and keep in mind the importance of the ‘big picture’.”

Editors and reviewers regularly have to slog through papers that seem to go on forever and, more dishearteningly, have the main points and interesting bits inexplicably hidden, when they assess them for possible publication. NSMB provides some pointers, a few of which are provided here:

Tell a story. We all love listening to a good story. And we all tell stories, but some are better at it than others, and those who tell the best stories are most able to get their points across. How you got your data is not that important—we don’t need a chronology (first we did this, then we did that, etc.). Instead, now that you have the data and have interpreted them a certain way, think about how best to tell a story in light of all the previous work in the field, the question(s) you are addressing and why that question is important. How do your results advance our understanding of the question(s)? Have you discovered something new or unexpected? Consider how your findings fit into the broader context of the field, whether they are likely to change the way people in the field will think about the topic and how they will drive further experiments in the future.

Be clear. Making your story clear is not the same thing as dumbing it down. No reviewer has ever said that a paper was too easy to read. We do, however, get complaints from reviewers about how complicated, convoluted or downright confusing a paper is. Clear, simple language allows the data and their interpretation to come through. Remember that clarity is especially important when you are trying to get complicated ideas across. Keep the jargon to a minimum and explain the terms you do use. When you’re done, give your paper to a scientist outside your field and ask that person to read it for clarity. He or she will be able to point out all the remaining jargon, whether the experimental design, results and data interpretation are clear and how interesting your paper is to someone working in another area.

Provide an informative title and abstract. PubMed allows one to search through ~19 million citations, and Table of Contents e-alerts bring you the latest from your favorite journals. And what do you see when your e-alert arrives or your search is complete?—the title and abstract. Most people will stop there without reading any further, so don’t blow it with a boring title. Make the abstract clear and try to get the ‘big picture’ across. Do not get bogged down in details. As an author, this is also your chance to draw your readers in, to entice them to read on. If the title and abstract are comprehensible to only a handful of people directly in your field, you have greatly narrowed the potential readership of your paper.

NSMB journal website.

Nature journals’ advice on how to write a scientific paper, which provides links to several independent resources.

How to get published in a Nature journal.

Science books to inspire new generations

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Five leading writers of science books are offering advice for budding authors in a series of interviews running from 4 Feb to 4 March in Nature‘s Books & Arts section. Researchers should be recognized for writing books to convey and develop science, according to an Editorial in Nature last week ( 463, 588; 4 February 2010, free to read online). Here is an extract:

“As the era of the electronic book dawns, perhaps hastened by Apple’s much-touted iPad, researchers should prime themselves to take advantage of the spacious book format. Unlike a tweet, blog or research paper, a good book offers space to breathe, to contemplate complex ideas and to convey a mode of thinking. But most scientists don’t think of writing one, and, if they do, they do it in secret.

In the hope that this might change, Nature last week began a series of weekly interviews with science book authors in its Books & Arts section, collected into a Web focus. Peter Atkins reveals the hard work behind a successful textbook; Carl Zimmer highlights how passion is essential for popular science; David Brin will reveal that criticism improves fiction writing; Georgina Ferry will share research tips for biographies; and Joanna Cole will explain how to convey science to children.

The role of textbooks in handing down the tenets of disciplines is changing as online components take over from printed text. Atkins acknowledges that the extra effort of producing layers of educational material for the web today makes writing a textbook daunting. Most researchers, he admits, would not be able to devote so much time to translating their work for students. Covering broad core subjects such as general chemistry would be nigh on impossible to do in snatched moments. He is lucky that, following his publishing success, his department supported his shift to full-time writing and teaching. Many would see their careers set back if their research was displaced.

Beyond textbooks, the human side of research deserves exposure as much as it ever has, through popular science accounts, biography and fiction. Although the publishing markets today apply a narrow filter, future readers can expect to enjoy access to a wider range of topics through e-books, which are easier to distribute and lack the overheads of print. As a specialist area, science stands to benefit.

Rather than limit scientific discourse to curt journal papers, researchers should embrace the book as another means of expressing not only their insights but also their visions. Through the various styles of writing, all aspects of science can be explored and laid out for posterity and learning. The expansiveness of a book allows sophisticated arguments to be put forward and widely debated; new ideas that cross disciplinary boundaries can more readily be shared and worked through.

But if this exhortation is to have any traction, the effort and skill required to write a book needs to be rewarded in the career recognition of scientists who devote time to mastering the art to good effect — a recognition that is commonplace in the social sciences and humanities. It is time to bring the book back into the science mainstream. This needn’t be a mass movement: just a dedicated few, but more of them, could fulfil the reasonable hope that their books will inspire a new generation. And they should be encouraged to do so."

Nature Web focus: how to write a science book. Selected content is free to read online during February.

Essential reading for Copenhagen at Nature Reports Climate Change

At the UN Climate Conference in Copenhagen this December, talk will turn to scientific, political and economic issues with a global reach and a long history — not easy to pick up from the daily news. Nature Reports Climate Change asked select experts on climate change what books we should be reading ahead of the big event. See Nature Reports Climate Change for the selections made my Mike Hulme, Tony Juniper, Mark Lynas, Oliver Morton, Ron Oxburgh, Rajendra K. Pachauri, Roger Pielke, Jr, Andrew Revkin and Joseph Romm, which range from popular scientific accounts to technical reports; and from explaining the controversies to passionate accounts of solutions. Some quotations from the recommendations:

-“a must-read book for those who want a primer on all the key solutions countries will be considering at Copenhagen.”

–“Policymakers will have to forge a highly ambitious deal to avoid the crisis.”

-" ‘Climate change fatigue’ is said to be an ailment slowly spreading through the media. As Copenhagen takes over the headlines, Bryan Lovell’s lively new book — peering into the doubts, concerns and prejudices that have dogged climate negotiators — is an instant tonic for this malady."

–“The painful truth is that no one knows how to decarbonize the global economy…..— it’s a lesson of history.”

-“As governments head grimly into negotiations determined to avoid a policy failure, it’s worth keeping in mind that the system they’re hashing out is not the only possible one or even the best.”

–“a grand agreement is less achievable than a set of specific deals on particular issues.”

-“Beyond the frequently invoked battle-line between climate change ‘believers’ and ‘sceptics’, there is a deeper, and in the end more important, division of thinking.”

–"This book is not going to help anyone get to grips with the intricacies of the UN climate negotiations, but if you want to lift your head from the trenches for an overview of the twenty-first century, it’s a great place to start. "

—“it clearly maps out the serious consequences of inaction, as well as the feasibility and affordability of action both to adapt to the impacts of climate change and to mitigate emissions of greenhouse gases.”

Holiday reading suggestions from Nature Methods

The Editorial in the July issue of Nature Methods is the journal’s popular annual round up of summer reading (Nat. Meth. 6, 471; 2009). According to the Editorial, for those who look hard enough there are a few good fiction books to be found with refreshingly realistic biologists as central characters in laboratory settings. A mix of the old and the new follows, including brief accounts of Cantor’s Dilemma by Carl Djerassi; Intuition by Allegra Goodman; Long for this World by Michael Byers; Arrowsmith by Sinclair Lewis; Experimental Heart by Jennifer Rohn; and Mendel’s Dwarf by Simon Mawer.

At the journal’s Methagora blog, Allison Doerr emphasizes one benefit of science-in-fiction: as a “medium for overturning stereotypes about scientists, and for getting more people interested in science and for educating them about what scientists do.” Comments and suggestions of good science-in-fiction from readers are welcome at Methagora.

Nature Methods’ previous science-in-fiction recommendations.

See also: From Bench to Book by Jennifer Rohn (Nature 451, 128; 2008).

Frank Gannon says farewell to EMBO reports

Frank Gannon says goodbye as senior editor at EMBO reports in the journal’s April issue (10, 293; 2009). I shall certainly miss his monthly editorials, which I always looked forward to reading and often mentioned on this blog. On the occasion of his goodbye, he looks back at his contribution:

EMBO reports has not only garnered a reputation for reporting good science, but also paved the way with a novel Science & Society section. It has been a joy to help mould this section into something that our readers appreciate. A related major task—and a great pleasure—has been writing monthly editorials. When I had finished the first editorial, I experienced a moment of panic as I was faced with the challenge of finding a topic for the next month and beyond. More than one hundred editorials later, that concern has long gone. There are so many topics to write about that are relevant to scientists and that are not often addressed in other journals. Some of my favourites include language barriers for non-English speaking scientists (March, 2008), The downsides of mobility (March, 2007), the fate of scientists who reach retirement age (March, 2004), bullying (October, 2008), Family matters (November, 2005), and role models and mentors (December, 2006). Then there are all of the societal topics that address how science is catering to, and is directed by, politics and business, such as the ‘Faustian’ bargain of private interests and university research (March, 2003), or the role of government in directing science (December, 2003). My editorial, An NIH/NSF for Europe ( June, 2002), was one of the first serious calls for a European Research Council, which has now become a reality. And, of course, it is always fun to take a sidelong look at the scientific community and comment on how we behave. My favourites on this theme are Conformists (October, 2007) and Meeting standards ( January, 2006). It was similarly amusing to write a tongue-in-cheek rejection letter to Charles Darwin ( January, 2009) while a crowded world of communication was eulogizing him for his two-hundreth birthday.”

And there is news of the new order:

“Howy Jacobs has agreed to become the new Senior Editor of EMBO reports. I have known Howy for many years, both as a great scientist and communicator, and I have had many thought-provoking and enjoyable discussions with him. I have no doubt that the journal is in good hands for the years to come. I am certain that with Howy’s guidance, EMBO reports will increase even further in value and stature as an important source of information for the scientific community—and our broader readership—communicating both insightful scientific research, and commenting on and reporting the ongoing debates about how science and society shape one other in the twenty-first century.”

Seminar on publishing excellence and citation data

Nature Publishing Group (NPG) and Thomson Reuters are holding a joint seminar on publishing excellence and how to correctly interpret journal citation data on 23 January 2009 in Sydney, Australia. This seminar will go into detail about the use and misuse of impact factors along with a presentation by senior editor Leslie Sage on how to get published in Nature.

Four speakers will present on the following:

Antoine Bocquet, Associate Director, NPG Asia-Pacific:

Growth of Nature Publishing Group

Dr Leslie Sage, senior editor, physical sciences, Nature :

How to publish a paper in Nature

Dr Berenika M Webster, strategic business manager, Thomson Reuters Scientific, Asia Pacific:

About use and misuse of impact factor and other citation metrics

Dr Dugald McGlashan, associate publisher, Asian journals, NPG:

Developments in author and reader services in a changing publishing landscape

This seminar is free to attend and open to those interested in publishing in Nature titles and journal citation data.

See here for more information, details of the venue, and to reserve your place.

Whimsical ways to communicate science

A clever use of fable brings surprising clarity to the story of climate change, thinks Euan Nisbet of Royal Holloway College, London, in his review for Nature Reports Climate Change (doi:10.1038/climate.2008.123) of Tyler Volk’s book CO2 Rising: The World’s Greatest Environmental Challenge. The author uses parables and puns to describe scientific concepts, creating a protagonist who is “a little carbon atom called Dave.” From the review:

“Like Prometheus, Dave habitually spends millions of years bound in a limestone cliff. But occasionally he escapes, most recently to travel variously into a glass of beer, through the rear end of an Irish earthworm, inside the brain of a giant Galapagos tortoise and as part of an air parcel to Mauna Loa where he is measured by climatologist Charles David Keeling, to be recorded on the infamous ‘Keeling curve’, which documents the twenty-first century rise in atmospheric CO2.

Dave has relatives: Coaleen, Oilivier and Methaniel in the fossil fuel family, and Icille. Coaleen heads for a strangler fig tree in Australia, Methaniel is taken up by a plant in the Arctic tundra, and Oilivier, who becomes a bicarbonate ion in the ocean, is followed by cheerful Dave, who finds himself diving to a sea bed carbon burial site. Really cool Icille gets trapped in an ice bubble.”

Members of the Nature Network science writers’ forum discuss whether this approach to communicating scientific research is “nauseous anthropomorphic twaddle” in the words of one contributor, or a way to “make concepts more accessible and fun” in the opinion of another. The reviewer believes it works in this case:

“Fables, like political cartoons, are powerful. Orwell’s Animal Farm was the stake through the heart of Stalin’s Marxism. Tyler Volk’s simple tales in CO2 Rising are not at that level, but they are clearer and more easily read than the prose of most scientific writing, even in good scientific journalism. That clarity brings understanding. Despite — or perhaps because of — its dreadful puns and apparent simplicity, this is a book that can persuade, can educate, and can change policy.”

Citizendium calls for contributions to Biology week

Biology Week, an online “open house” for biologists, biology students and other interested people, begins today (22 September) on Citizendium, a ‘next-generation’ wiki encyclopedia started by Wikipedia co-founder Larry Sanger. (See this Peer to Peer post for a brief comparison of online encyclopaedias.)

From the Citizendium announcement: "during this week, biologists and anyone interested in the topic are invited to test the Citizendium system. Editors and authors from the project’s Biology Workgroup will be on hand to meet and greet new people on the wiki. “I strongly believe that the Citizendium system will be appealing to many scientists and scholars,” said Sanger. “Many of them just need to give it a try. Biology Week is an excuse for biologists to try out the system together.” Gareth Leng, a professor of Experimental Physiology at the University of Edinburgh, and Citizendium author and editor, described the project: ‘Our role will not be to tell readers what opinions they should hold, but to give them the means to decide, rationally, for themselves. The role of experts is critical—not to impose opinions, but to support accuracy in reporting and citing information’. "

The Citizendium, or “citizens’ compendium”, uses the same software as Wikipedia and is a public-expert hybrid project to produce a general reference resource. The community encourages general public participation, but makes a low-key, guiding role for experts. It also requires real names and asks contributors to sign a “social contract.” As a result, the project is said to be vandalism-free and, despite its youth (its public launch was just 18 months ago), has steadily added more than 8,000 articles.

Further information:

Citizendium website and press release about this project.

Biology Week homepage.

Sample article: Life, said to demonstrate the success of the collaborative-editing system.

(Thank you to Shirley Wu for alerting me to this project.)

Better writing and more space needed online

Linda Cooper of McGill University, Montreal, writes in Correspondence (Nature 455, 26; 2008):

The World-Wide Web is remarkable as a vehicle for communicating scientific discoveries. Online journals unite distant researchers and inspire worldwide collaborations. However, despite these advantages, there is a growing risk that papers published today are less successful in meeting their objectives than in the past.

To ensure clear communication, most journals encourage authors to write for a broad audience. But most published papers still compress too much information into uncomfortably short articles, leading to convoluted sentences, specialized terminology and a proliferation of abbreviations. Errors in grammatical style result in impenetrable and ambiguous texts that seriously undermine the scientific literature. This need not be the case.

Electronic publishing could offer authors limitless space to explain their ideas and discuss their new findings. Surprisingly, though, online manuscripts are often bound by the same space constraints as print manuscripts.

Authors are instructed to conform to print-journal guidelines, leading many to redirect essential material to online Supplementary Information. The recent explosion in Supplementary Information is problematic: it seems to have no standard format among different journals, and there is a common misperception that data in Supplementary Information have escaped peer review. It can be a nuisance for readers too. For example, if they want to peruse articles away from their computers and haven’t downloaded the related Supplementary Information, it may be impossible for them to understand or fully evaluate the papers’ merits.

The scientific article in 2008 is on the cusp of change, with one foot in the past and one in the future. Science journals should shed the constraints of the old media and exploit the advantages of the new, to offer readers easy and enjoyable access to the scientific literature.

Even if journals are successful at reinventing themselves, it won’t be adequate unless the quality of writing in scientific manuscripts improves. Paradoxically, the deterioration in science writing seems to coincide with the swell in e-publications — at a time when the need to communicate advances in science is more urgent than ever. The quality of writing needs to match the power of today’s e-publishing technology.