Call for submissions: Structural biology applications of coherent X-ray lasers

Special Article Collection

Structural biology applications of coherent X-ray lasers
Organizers: Prof. Janos Hajdu and Dr. Filipe Maia (Uppsala University)

Partnered with the Coherent X-ray Imaging Data Bank (CXIDB)

Scientific Data is inviting submissions releasing and describing datasets generating from the use of coherent X-ray lasers in the study of biological structure. Submitted articles will be considered for inclusion in a special article collection to be launched in the first half of 2016. Continue reading

A snapshot of life on the savannah

Guest post by Todd J. Vision, Dryad Digital Repository. This blog was first posted on Dryad News & Views on Tuesday, June 9th 2015.

Dryad’s latest featured data package is from Alexandra Swanson and colleagues at the Snapshot Serengeti project, and accompanies their peer-reviewed article in Scientific Data. It provides a unique resource for studying the one of the world’s most extraordinary mammal assemblages and also for studies of computer vision and machine learning. In addition, data from Snapshot Serengeti is already being used in biology and computer science classrooms to enable students to work on solving real problems with authentic research data. Continue reading

BioSharing wants your input

Guest Post by Dr. Allyson Lister, Knowledge Engineer, BioSharing & ISA-Tools, University of Oxford e-Research Centre
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BioSharing‘s Information Resources are curated and searchable web-based registries of linked information about content standards (broadly including minimum information reporting requirements, terminologies and representation formats/models), databases, and (progressively) journal and funder policies in the life sciences. Continue reading

Scientific Data now indexed by PubMed

Scientific Data’s content is now indexed by PubMed and freely available through PubMed Central (PMC), two interlinked services maintained by the US National Library of Medicine that are widely used by researchers in the biological and biomedical sciences. We have also been approved for indexing in the more selective MEDLINE database and our content will be progressively incorporated into MEDLINE in the near future. Continue reading

Data Matters: Interview with Michael Milham

milham_bioMichael P. Milham, MD, PhD, is an internationally recognized neuroscience researcher, clinician, and the founding director of the Center for the Developing Brain at the Child Mind Institute.

You have helped found and organize several major brain imaging data sharing projects, starting with the 1000 Functional Connectomes Project. Could you tell us a bit about how these projects got started?

That actually brings up a funny memory – back in 2008, myself and some colleagues had just had a paper accepted, which focused on establishing the test-retest reliability resting-state after MRI in the journal Cerebral Cortex. At that point I was in San Francisco, and went for a truly bizarre hair cutting experience.

As I walked out the door of the barbers, I rang my colleague Zarrar Shehzad and mentioned that we should start looking across imaging sites. Zarrar, a talented Research Assistant of mine at the time, asked “why would I do that?” My response was “you’re right! It’s not your thing”. I then called Bharat Biswal, a friend and colleague, who helped to found resting state fMRI – he was very excited to give it a try. Continue reading

Call for submissions describing plant phenotype data

An Editorial published this week at Nature Genetics endorsed the goals of the DivSeek initiative and issued a call for wider sharing of plant phenotype data – particularly phenotypic data associated with important genetic and genomic studies. Scientific Data supports this call, and we invite researchers to submit manuscripts to our journal describing and releasing such datasets. Continue reading

Scientific Data outreach in Japan

Scientific Data and Nature Publishing Group’s open data initiatives have been presented to Japanese audiences through several recent events.

59th annual meeting of Japanese Society of Human Genetics

On 22 November, a luncheon seminar was arranged during the 59th annual meeting of the Japanese Society of Human Genetics, co-sponsored by Japanese Society of Human Genetics (JSHG) and Nature Publishing Group. The seminar, ‘Scholarly Communication in Open Research era – open data and data deposition with example of Scientific Data and Human Genome Variation’, discussed trends in the open data movement that prompted the launch of two open access journals (Human Genome Variation is co-published by JSHG and Nature Publishing Group). Continue reading

Trialling a pragmatic approach to clinical data disclosure

SD_Editorial_150At Scientific Data we have been considering how we might develop our scope and editorial policies to better accommodate clinical research data. Publication of clinical research presents a number of challenges, which we will not be the first to have attempted to solve. In particular, we might need to support linking of our primary article type, the data descriptor, to non-public datasets – datasets that cannot be open access due to patient privacy or other legitimate constraints. While we advocate setting the default for research data to open, we are also conscious that full anonymisation of clinical data is often impossible to achieve with certainty. Continue reading

Scientific Data expands cooperation with the Nature journals

This week, Nature and the Nature research journals made some important updates to their data availability policies: updates that strengthen the editorial links between Nature journals and Scientific Data; updates that provide better resources and support for authors wishing to better support reproducible research; and updates that leverage the work of Scientific Data to curate datasets and identify suitable data repositories for more authors. See the related editorial published at Nature. Continue reading