Retraction reaction

Nobel prize-winning neuroscientist Linda Buck has retracted a 2001 Nature paper. In the retraction in this week’s Nature, the authors report difficulty replicating the data and ‘inconsistencies’ between the original data and figures and data printed in the paper. Buck told Nature reporter Heidi Ledford that the figures and data in question were contributed by the first author, Zhihua Zou, who was unavailable for comment.

This is the highest profile retraction that I can recall in neuroscience, but so far, there has been little fallout. Perhaps that’s because the original findings were notable only in the neuroscience community rather than in the general public. Regardless, it indicates that neuroscience and its well known labs are not immune from fraudulent data. Although I admire Buck’s swift and direct action, it concerns me that the first author has been assigned the lion’s share of the blame. This seems like a familiar refrain, and I find it troubling.

Separate but not equal?

If a disease affects men and women differently, does the disease’s mechanism differ by sex? My guess would be no. However, a recent article has me wondering. Schizophrenia symptoms, age of onset, and disease course differ in men and women, and some researchers report increased risk of schizophrenia in men relative to women. Now Shifman et al. report a single nucleotide polymorphism (SNP) associated with schizophrenia in women but not men in a recent article in PLoS Genetics.

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Teaching an old organism new tricks

How many neurons are required for learning and memory? None, according to Saigusa et al., who report basic learning behavior in unicellular amoebae in a recent article in Physical Review Letters.

The amoeba Physarum polycephalum is sensitive to environmental conditions. At room temperature, Physarum move at a constant rate. However, dry air slows the rate of Physarum movement.

The authors puffed dry air on Physarum once an hour for three hours. On the fourth hour, Physarum slowed down, even when no puff of air was delivered. Subsequent hours without air puffs slowly extinguished the periodic slowing of Physarum movement. However, one dry air puff six hours later reactivated the hourly behavior pattern.

These behaviors are consistent with rudimentary learning in higher organisms. Do these data indicate that unicellular organisms can learn? Physarum, like other organisms, have precise biological rhythms set by cellular oscillators. So, Physarum may be particularly sensitive to events occuring at regular intervals, and their periodic slow-down may represent the setting of a biological rhythm. However, rhythms alone do not explain extinction of the behavior in the absence of additional dry air puffs.

Do these data indicate a potential origin for learning, or do they indicate that our definition of learning in complex organisms is too simplistic? I’m a bit torn.

Circular logic?

What causes autism? The lack of answers or even particularly good leads is frustrating to say the least. Not surprisingly, people both within the scientific community and the general public are hungry for answers, and my general opinion is that the more information the better. However, I’m a little puzzled by a report from the British Association for the Advancement of Science’s annual Festival of Science.

According to Simon Baron-Cohen‘s ’extreme male brain’ theory, people with autism show extreme versions of behaviors that are normal in men. In general, men tend to empathize less and systematize more than women. These drives are taken to an extreme degree in people with autism, resulting in the behaviors associated with autism, including reduced eye contact and verbal skills and increased repetitive behavior and orderliness, according to Baron-Cohen.

Is the hormone that causes male behaviors involved in autism? At the Festival of Science, Baron-Cohen and Bonnie Auyeng reported that fetal testosterone contributed to ‘autistic traits’ in normal eight-year-old children. The researchers calculated an ‘autism spectrum quotient’ from questionnaires about children’s social behaviors and cognitive skills completed by their mothers. Fetal testosterone levels recorded eight years earlier accounted for more than 20% of the variability in this quotient.

According to the researchers, these data suggest that elevated testosterone levels in the womb may contribute to traits associated with autism. However, based on the researchers’ reasoning, wouldn’t an alternative explanation be that fetal testosterone correlates with male-typical behaviors? Animal studies have shown that testosterone produced in the fetal testes masculinizes the brain (allowing male-typical behavioral patterns). Perhaps the present study indicates that male-typical behaviors are graded, with high levels of fetal testosterone producing ‘super males’.

While interesting, it’s not clear to me that these data are directly relatable to autism. For that, we’ll need to see Baron-Cohen’s next study, involving clinical data and amniotic samples from 90,000 people with and without autism.

Spare change

Nominations open Monday for the first Kavli prizes in neuroscience, astrophysics and nanoscience. One $1,000,000 prize will be awarded for each of the three fields in Norway next year. Sound like another Scandanavian award? Unlike Nobel prizes, which tend to reward scientists at the ends of their careers, the Kavli Prize will recognize innovation, according to a recent article in Time magazine. Fred Kavli, a Norwegian physicist/business mogul/philanthropist, has been funding giant awards for (the odd mix of scientific pursuits) neuroscience, astrophysics and nanoscience research at universities, like Caltech, Harvard, MIT and Cambridge. So, if you know of a deserving neuroscientist, the application deadline is 15 December.

Down the drain

If you think managing chemical waste in your lab is like throwing money down the drain, imagine how Daniel Storm feels. According to the Seattle Post Intelligencer, rather than paying $15,000 to properly dispose of 5 cans of ethyl ether, the professor of pharmacology at the University of Washington took an axe to them and poured them down the drain. According to Nature, Storm falsified waste manifest sheets in an attempt to cover up the crime. Storm was sentenced to 3 years of probation, 80 hours of community service and a $5,000 fine in U. S. District Court and is undergoing university disciplinary review.

Like most people who have had to sit through the courses and fill out the monthly paperwork required to dispose of anything other than water, I can understand Storm’s frustration. Do people in hazmat suits really need to close down a building over a broken thermometer? However, you don’t have to be an environmentalist to realize that pouring an extremely flammable liquid into university pipes isn’t a terribly smart thing to do.

We’re about to nail this mother to the door

That’s what Gary Lynch said of the physiological mechanism of memory in 2005 when L. A. Times reporter Terry McDermott asked to visit Lynch’s University of California, Irvine lab. McDermott returned repeatedly, and his findings were featured last week in an epic four-part series in the L. A. Times.

The series reads like engrossing Greek drama, complete with a misunderstood hero and the tragicomedy of high stakes science. Lynch is painted as the lone wolf battling evil editors and competitors to get the truth out. Although it’s over-dramatized and Lynch’s role is perhaps a bit overstated, the science, aimed entirely at the lay person, is quite good. According to a recent report from the Pew Research Center, few Americans (19%) follow science news, so if it takes high drama to sell science stories to the public, I’m all for it. McDermott should be congratulated for getting neuroscience on the front page.

Toxic avengers

It’s been a tough month for parents. Open a newspaper, and you are virtually guaranteed to read about the latest environmental toxin seeping into children’s blood and endangering neuronal or reproductive development. Mattel recalled toys that may be coated in lead paint. Meanwhile, a committee at the National Institute of Environmental Health Sciences (NIEHS) declared ‘some concern’ that a compound in many plastics, bisphenol A (BPA), affects neuronal development. And finally, the University of California at Davis announced a several million dollar study of possible environmental triggers for autism.

If you are a parent and also a scientist, what is the proper response to the conflicting urges to protect your children and evaluate the data? Rebecca Roberts, a biochemist who studies BPA, writes in PLoS Biology:

The mother in me still waits anxiously for the regulatory agencies and the legislature to catch up with the research on BPA that the scientist in me appreciates. I have switched my brand of sippy cups to one that doesn’t contain BPA (a quick internet search will yield many sites describing these and other BPA-free baby products). Nevertheless, while I feel proactive as I watch my daughter happily drink her water, I still cringe a little bit when she drops the sippy cup, toddles over to her toy bin, and starts to gnaw on her plastic turtle instead.

Ladies in waiting

Keeping the commoners happy is easy when you have pharmacology on your side. Complex caste systems exist throughout the animal kingdom, but is it purely social feedback that keeps us all in our places? Vergoz, Shreurs and Mercer report that a pheromone prevents worker honeybees from forming aversive associations while they serve the queen in a recent article in Science.

In the honeybee society, the females do all of the work. Young females attend to the queen and her hive. Later in life, they leave the hive to collect nectar and pollen (the average honeybee lifespan is 4-6 weeks). Queen mandibular pheromone (QMP), which is produced by the queen and transferred to the rest of the hive by her caretakers, prevents the ovarian development of other females.

Honeybees show both appetitive (positively reinforced) and aversive (negatively reinforced) learning. In response to odors, honeybees can be trained to extend their tongues in anticipation of a sweet reward or extend their stingers in anticipation of a shock. Octopamine and dopamine are important in appetitive and aversive learning, respectively. QMP alters brain dopamine levels. Does QMP affect aversive learning?

The authors found that QMP blocked aversive, but not appetitive learning in 6-day-old female bees. However, QMP had no effect on aversive learning in 15-day-old female bees.

How does QMP affect aversive learning? The QMP component homovanillyl alcohol (HVA) blocked aversive learning, whereas another QMP component hydroxybenzoate (HOB) did not. HVA is similar in structure to dopamine, so HVA may be responsible for the QMP-mediated reduction in brain dopamine and the decline in dopamine-mediated aversive learning.

Why block aversive learning in subordinates? The authors speculate that QMP prevents young attendants from forming aversive associations with the queen and therefore promotes loyalty and diligence. Perhaps the age-dependent decline in QMP’s effect on aversive learning induces older honeybees to leave the hive.

It is highly unlikely that humans have an Orwellian pheromone mediating subservience. However, there probably is a QMP keeping us in our societal places: the Quantity of Money in our Pockets.