First drugs found to inhibit elusive cancer target

By Melinda Wenner Moyer

Ever since scientists discovered the cancer-promoting gene MYC in the late 1970s, researchers have dreamt of developing drugs that inhibit its function. Yet efforts to target MYCactivity have proven unsuccessful, in part because the protein product encoded by the oncogene lacks an obvious target-binding site. Now, however, scientists from a handful of research groups have found a way to inhibit MYCindirectly—by preventing an upstream protein from instigating the expression of MYCand its downstream targets. Buoyed by the promising therapeutic effects that such experimental drugs have had in mice with several types of cancer, companies are racing to test the molecules in clinical trials, despite lingering questions about how, exactly, they work.

“We, like everyone else, are very excited,” says Brian Huntly, a hematologist at the University of Cambridge in the UK. “We’re very keen to get this into humans as soon as possible.”

(Click here to continue reading.)

Preemptive genotyping trialed to prevent adverse drug reactions

MONTREAL — In March 2010, the US Food and Drug Administration (FDA) added a ‘black box’ warning to the drug clopidogrel, noting the link between certain genotypes and reduced drug efficacy. Despite the label change, however, only around one in every 200 physicians actually orders a genetic test when prescribing clopidogrel — an antiplatelet medicine marketed by Sanofi and Bristol-Myers Squibb as Plavix — according to data from Medco Health Solutions, a New Jersey–based pharmacy services provider.

The slow uptake of such testing is not due to some ingrained aversion to pharmacogenetic information, however. In work presented at the International Congress of Human Genetics here last month, Medco’s senior director of personalized medicine Lon Castle found that 30% of cardiologists and 41% of primary care providers agreed to free genetic testing when contacted after having prescribed clopidogrel for their patients. Physicians “are willing to do it; they’re eager to do it — they just need some more information to make themselves comfortable with it,” Castle says.

But after-the-fact testing is already one step too late, says Dan Roden, assistant vice-chancellor for personalized medicine at the Vanderbilt University Medical Center in Nashville, Tennessee. At the meeting here last month, Roden and his colleagues reported the results of a retrospective review of the records of nearly 53,000 regular users of the Vanderbilt health system. They looked at just six of the 99 drugs with FDA-sanctioned pharmacogenetic information, including clopidogrel, and showed that between 300 and 600 serious adverse drug reactions could have been avoided over the past five years had preemptive genotyping coupled to effective intervention strategies been in place.

With an eye to pharmacogenomically guided drug therapy, in September 2010 Vanderbilt launched PREDICT (short for Pharmacogenomic Resource for Enhanced Decisions in Care and Treatment), a system-wide effort to proactively link genetic information to the institution’s extensive electronic health record system and then alert physicians through a pop-up notice if a patient’s genetics predict any complications with medicines they plan to prescribe. As a first step to broader implementation, the trial is starting out with clopidogrel response in people undergoing heart catheterizations — a standard procedure performed on more than a million Americans each year so that doctors can monitor their patients’ coronary arteries for any signs of illness. To date, more than 3,000 people entering the ‘cath lab’ have also received a genetic test for DNA variants that have been linked to drug responses — information that then goes into their medical record.

(Click here to continue reading.)

EDITORIAL: Risk-takers wanted

Treating costly conditions such as Alzheimer’s disease may soon collapse healthcare systems around the world, yet companies hesitate to invest in the long, large clinical trials required to discover disease-modifying therapies. New incentives are necessary to turn this tide.

Although there is some disagreement about the right therapeutic target to combat Alzhemer’s disease—whether it’s β-amyloid, tau phosphorylation or something else—there is overwhelming agreement about how to address many of the other problems that plague this field.

If you were to conduct a poll of Alzheimer’s researchers, virtually all would agree that current clinical testing of potential new therapies starts too late, after the brain is severely damaged by the disease. They would also agree that early diagnosis and biomarkers predictive of clinical progression are crucial for combating the disease.

Incorporating these views into clinical-trial design would certainly result in better trials, but such trials would also be very large and very long. Longitudinal studies are beginning to identify people at risk to develop Alzheimer’s disease: subjects with subtle cognitive or biochemical changes who, years later, will go on to develop the pathology. But validating these markers in a clinical trial will require the trial to start as early as a decade before the onset of the disease, when the presumptive biomarkers start to appear and before brain damage has advanced too far. More importantly, as biomarkers only help identify people at risk, a fraction of whom ultimately won’t develop Alzheimer’s, the trial would have to include thousands of patients to allow for these ‘false positives’ and still pick up a statistically significant therapeutic signal. Such a trial would be prohibitively expensive.

(Click here to continue reading.)

New mouse models of autism highlight need for standardized tests

By Sarah C P Williams

nm1111-1324-I1.jpgMost laboratory mice, when meeting new cagemates, will sniff the strangers thoroughly. But the mice in Matthew Anderson’s lab instead sit alone, licking their paws repetitively. They ignore other mice, avoid new toys and rarely make noise. Taken together, the abnormalities closely resemble the behavioral symptoms seen in people with autism, a disorder that has been proven difficult to accurately recapitulate in animal models—until recently.

“When I first started working on this, I really wondered whether we’d be able to study autism in a mouse,” says Anderson, a neuroscientist at the Beth Israel Deaconess Medical Center in Boston. “But these mice act just like you would expect with autism. I was pleasantly surprised.”

Mouse models for autism first started to emerge around ten years ago. And as researchers have discovered more genes linked to the disease, they have continued to generate more mouse models that are collectively providing the field with a window into the brain structure, neuron function and cellular pathways associated with autism, as well as a platform for testing new drugs. But as more models emerge, it has become increasingly clear that the field needs standardized behavioral assays to compare the effects of the different genetic mutations more clearly. “All these mice have been tested in different labs using different paradigms,” says Daniel Geschwind, a neurogeneticist at the University of California–Los Angeles. “People bandy about repetitive behavior, for example, but what some folks call repetitive behavior is different than what others call repetitive behavior.”

(Click here to continue reading.)

Image: courtesy of Philip Renna/Cold Spring Harbor Laboratory

NEWS FEATURE: Autism, authenticated

This past spring, Christian Schaaf sat back and watched seven-year-old Lily play in his office at the Baylor College of Medicine in Houston. She looked just like any other girl her age, he recalls, but she didn’t seek interaction or even eye contact in the way a child normally would. Instead, she communed with a corner of the room, excitably hopping and flapping her arms as if that spot held a treat too great to bear. Without peering into the file in front of him, Schaaf knew what afflicted Lily. “I’ve seen enough children that when I see someone with autism, I have a high suspicion for it,” he says.

Lily (not her real name) and her mother didn’t come to Schaaf’s office that day for a diagnosis; a psychiatrist had already detected autism after her fourth birthday. They visited Schaaf, a clinical geneticist, to search her genome using a chromosomal microarray. The technology can find duplications or deletions of small segments of DNA, known as copy-number variants (CNVs), to pinpoint the genetic aberration that might have caused the disorder. Lily’s parents hoped that a genetic diagnosis would help them better understand and treat her specific form of autism—and, ultimately, help her get the services she needs to have the best chance at adult independence.

Such genetic tests for autism have only become available in the last few years. But, owing to high demand, autism testing has expanded from research centers to private companies. In the US, six companies now offer laboratory-developed tests to doctors that specifically target the developmental disorder, searching the genome for either irregular CNVs or single-nucleotide polymorphisms (SNPs) that could explain the symptoms. And these tests aren’t cheap: a microarray costs, on average, $1,500, and that’s without the bells and whistles such as doctor visits and additional gene sequencing. Although the tests themselves aren’t therapeutic, they represent the leading edge of a deeper genetic understanding of autism that could lead to targeted therapies—a market that UK-based research publisher Global Data expects to top $5 billion in the US in 2018, according to an October report.

For the most part, the diagnosis of autism remains the domain of psychiatrists, who do so on the basis of a range of symptoms, including delayed speech, repetitive behaviors and social withdrawal. These abnormalities remain difficult to detect until a child is around four years of age or older, which is unfortunate because receiving therapy from age two can improve outcomes for youngsters with developmental disabilities. “The earlier the diagnosis, the earlier you can start some type of interventional therapy,” says Stephen Scherer, director of the Centre for Applied Genomics at Toronto’s Hospital for Sick Children.

The diagnostic holy grail is a molecular test that can pinpoint the disorder at birth to hook children into therapies straightaway. Just a few decades ago, this suggestion would have sounded ludicrous. From the 1950s through the 1970s, doctors thought autism resulted from poor parenting and social conditioning by ‘refrigerator mothers’, so called for parents supposedly being cold with their kids. “Now there has been a paradigm shift,” says Schaaf. “We think that 80–90% of what causes autism is really the genetics."

(Click here to continue reading.)

Mysteries about drug metabolism in the obese weigh on doctors

By Alisa Opar

The surgery was a success, but a question loomed after the procedure: given that the patient was obese, what was the right antibiotic dose? “The thought was, well, she’s twice as big as a normal person, so we’ll give her twice the dose,” says Aaron Cook, a clinical pharmacy specialist at the University of Kentucky in Lexington. “For that drug, levofloxacin, there’s just no information to go on, no dosage recommendation for obese patients.”

The patient fared well, but such conundrums are becoming increasingly common as obesity rates rise around the globe. Just a month ago, researchers released new figures estimating that the US will see an additional 65 million obese individuals by 2030 (Lancet 378, 815–825, 2011). Already in the country approximately one in three adults and one in six children are obese—a condition that can precipitate heart disease, diabetes, respiratory failure and other illnesses that often require medication. But experts say that merely doubling the dose isn’t the solution because the physiological changes that accompany obesity, such as increases in the volume of blood pumped by the heart and fat mass, can in turn lead to changes drug absorption and metabolism.

(Click here to continue reading.)

Childhood tuberculosis treatment remains imprecise science

By Julie Manoharan

fighttuberculosis.jpgLast year, the World Health Organization released updated procedures on how best to tackle the global scourge of tuberculosis. The fourth edition of the “Treatment of tuberculosis: Guidelines” recommended, among other changes, increasing the dosage of tuberculosis medication required to treat children. But, in a sense, the new guidance provided a destination without a map: it failed to address the larger problem of how to improve the accuracy of pediatric dosing.

In recent months, researchers have pointed to a host of problems plaguing the diagnosis and treatment of tuberculosis in children, especially those younger than age 5. For example, at a June workshop held by a taskforce of the US Centers for Disease Control and Prevention, Steve Graham of the Royal Children’s Hospital in Melbourne, Australia called for new and better means of pediatric tuberculosis diagnosis, which can be complicated by concurrent ailments such as malnourishment, HIV infection and pneumonia. And, in September, scientists noted that a negative result from the new interferon-gamma release assays cannot definitively rule out tuberculosis in children (Pediatr. Infect. Dis. J. 30, 817–818, 2011). Also in September, another group urged that animal models for tuberculosis “must be designed and utilized in a manner that is also pertinent to the pediatric population” by addressing age-related variance in drug metabolism (Pharmacol Res. 64, 176–179, 2011).

(Click here to continue reading.)

Image: 1930s US poster via Wikimedia Commons

New fee structure proposed by FDA might lead to more talk

Ever since 1992, when US lawmakers passed the Prescription Drug User Fee Act (PDUFA) to accelerate review of new drugs by the US Food and Drug Administration, industry money has had an increasingly important role in fueling the regulatory agency. In the program’s first year, drug companies paid less than $9 million total to the FDA through the initiative. But in the past two decades the amount has ballooned; this year, the agency anticipates receiving at least $619 million in user fees, composing roughly 65% of its budget for overseeing human drugs.

Despite the torrent of funds, the FDA has still failed to meet its goal of completing the review of 90% of new drug applications within ten months. Industry isn’t exactly pleased with this report card, and they have spent the past year in negotiations with the agency to plan how the fees can be used to make drug review more efficient.

(Click here to continue reading.)

Ten years on from anthrax scare, analysis lags behind sequencing

By Amber Dance

anthrax.JPGA decade ago this month, a microbiologist at Northern Arizona University, in Flagstaff, took a special delivery from the US government. Federal investigators wanted the scientist, Paul Keim, to identify the anthrax that appeared in letters mailed to news organizations and US lawmakers. Overnight, he used PCR to determine that the anthrax sent was the Ames strain, commonly used in research—but that was just the beginning of a scientific investigation that would catapult the still wet-behind-the-ears science of microbial forensics to the forefront of the criminal inquiry.

Ten years on, Keim’s PCR-based technique seems downright quaint in comparison with modern, speedy DNA sequencing. “In a lot of ways we’ve matured,” says Bruce Budowle of the University of North Texas Health Science Center in Fort Worth. But there are challenges ahead, adds Budowle, who retired in 2009 from the US Federal Bureau of Investigation (FBI), where he was involved in the anthrax studies as a senior scientist in the laboratory division: “In a lot of ways, we’ve got a long way to go… We haven’t grown in the interpretation of the results and what they might mean.”

Overall, the country has improved in many aspects of preparedness. The US government spent $60 billion on biodefense over the last decade, including the 2004 founding of Project BioShield. The $5.6 billion initiative, managed by the government’s Biomedical Advanced Research and Development Authority (BARDA) since 2006, is charged with stockpiling medicines and funding research on new therapies that could be used in instances of bioterrorism. And the spending continues: last month, BARDA awarded a five-year $68 million contract to the New Jersey company Elusys Therapeutics to develop a prophylactic treatment against anthrax.

(Click here to continue reading.)

Image: via Wikimedia Commons

Businesses ready whole-genome analysis services for researchers

By Trevor Stokes

The cost of sequencing an individual’s entire genome has fallen precipitously over the past five years, from around $100 million for the first personal genome to under $5,000 today when sequencing services are purchased in bulk. In response, a handful companies have started developing whole-genome annotation services that give clinical researchers lacking expertise in bioinformatics the ability to use genomic data for disease-discovery and drug-response testing.

One company, Knome, based in Cambridge, Massachusetts, already offers a package deal. For about $5,000 it will sequence and annotate a genome—with a minimum order of ten genomes. Meanwhile, two California companies, Emeryville-based Omicia and Personalis in Palo Alto, are beta-testing annotation services in academic settings, with future plans to roll out their services in the clinic. Although neither of the two has set its pricing yet, Omicia is expected to release an annotation service for academics and clinicians in early 2012.

Notably, the whole-genome approach to DNA analysis stands in stark contrast to the single nucleotide polymorphism (SNP) method. Whereas the former involves sequencing the full three billion base pairs of DNA in the human genome, the latter typically looks only at around a million single-letter variants at disparate points along chromosomes.

(Click here to continue reading.)