First mutation-specific treatment for cystic fibrosis filed for approval

‘Kalydeco’ may sound like a type of Californian interior design style, but it’s actually the name of a new cystic fibrosis drug that Vertex Pharmaceutical announced today it has submitted for market approval in the US.

It’s been a good year for Cambridge, Massachusetts-based Vertex. In May, the US Food and Drug Administration approved the company’s protease inhibitor drug Incivek (telaprevir) — one of the first therapies designed to specifically target proteins of the hepatitis C virus. And now Vertex is hoping to be provide the first treatment that specifically hits the mutated protein responsible for cystic fibrosis, a fatal genetic disorder that afflicts around 80,000 people worldwide.

The small molecule drug formerly known as VX-770 is designed to treat the 4% of people with cystic fibrosis who have a rare mutation called G551D in their CFTR (cystic fibrosis transmembrane conductance regulator) gene. Kalydeco — which, according to Vertex’s press release, is actually pronounced more like the first part of ‘kaleidoscope’ — works by propping open the defective chloride channel protein encoded by CFTR to allow the transport of ions across the cell membrane. As we reported earlier this year, in a study of 161 people with at least one copy of the G551D mutation participants taking the Vertex drug saw their ability to blow air from their lungs improve by 10% and their sweat levels also returned to normal. (See ‘Mutation-specific cystic fibrosis treatments on verge of approval’ for more.)

In a statement, Robert Beall, president and chief executive of the Cystic Fibrosis Foundation, which has invested approximately $75 million in Vertex’s product pipeline, remarked that Kalydeco is “an important potential new medicine for the treatment of some people with CF.” But his words hint at the fact that the vast majority of the people living with the disease will not benefit from Kalydeco alone. Instead of the G551D mutation, 90% of cystic fibrosis sufferers carry an alternate coding error that prevents the CFTR protein from folding properly in addition to disturbing its chloride pumping activity.

In hopes of treating these people, Vertex is combining Kalydeco with another experimental agent called VX-809 in a 160-person clinical trial that is currently enrolling participants. Meanwhile, the company said it plans to turn in its EU application of Kalydeco for people with the G551D mutation by the end of the month.

Mysteries about drug metabolism in the obese weigh on doctors

By Alisa Opar

The surgery was a success, but a question loomed after the procedure: given that the patient was obese, what was the right antibiotic dose? “The thought was, well, she’s twice as big as a normal person, so we’ll give her twice the dose,” says Aaron Cook, a clinical pharmacy specialist at the University of Kentucky in Lexington. “For that drug, levofloxacin, there’s just no information to go on, no dosage recommendation for obese patients.”

The patient fared well, but such conundrums are becoming increasingly common as obesity rates rise around the globe. Just a month ago, researchers released new figures estimating that the US will see an additional 65 million obese individuals by 2030 (Lancet 378, 815–825, 2011). Already in the country approximately one in three adults and one in six children are obese—a condition that can precipitate heart disease, diabetes, respiratory failure and other illnesses that often require medication. But experts say that merely doubling the dose isn’t the solution because the physiological changes that accompany obesity, such as increases in the volume of blood pumped by the heart and fat mass, can in turn lead to changes drug absorption and metabolism.

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Protein folding pioneer named new director of NIH’s basic research arm

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The US National Institutes of Health announced today that cell biologist Chris Kaiser will head up the $2 billion basic research arm of the federal funding agency. Kaiser, currently chair of the Massachusetts Institute of Technology’s biology department, expects to take over the reins of the US National Institute of General and Medical Sciences (NIGMS) from interim director Judith Greenberg in the spring of 2012.

“This job is probably one of the only jobs I would ever consider leaving MIT for. It is so important,” Kaiser told Nature Medicine. “I view it as one of the most important administrative positions in science.”

The NIGMS has funded Kaiser’s research at MIT for the last 20 years — ever since he set up shop as an independent investigator. His work on protein folding and membrane trafficking in yeast models is closely aligned with the NIGMS’s major objective: to understand basic biological processes at a molecular level.

As director of the NIGMS, Kaiser says his top priority is to work within current and future budget constraints to keep the traditional NIH funding streams alive and working for extramural researchers. He also plans to support training of graduate students and postdoctoral researchers, and encourage people to join the scientific workforce. “That is something I take very seriously,” Kaiser says. “I want to make sure the training programs do their best at bringing the brightest young people into research careers.”

For more on the NIGMS, read our Q&A from earlier this year with former director Jeremy Berg, who left the agency in June.

Image Credit: NIGMS

Childhood tuberculosis treatment remains imprecise science

By Julie Manoharan

fighttuberculosis.jpgLast year, the World Health Organization released updated procedures on how best to tackle the global scourge of tuberculosis. The fourth edition of the “Treatment of tuberculosis: Guidelines” recommended, among other changes, increasing the dosage of tuberculosis medication required to treat children. But, in a sense, the new guidance provided a destination without a map: it failed to address the larger problem of how to improve the accuracy of pediatric dosing.

In recent months, researchers have pointed to a host of problems plaguing the diagnosis and treatment of tuberculosis in children, especially those younger than age 5. For example, at a June workshop held by a taskforce of the US Centers for Disease Control and Prevention, Steve Graham of the Royal Children’s Hospital in Melbourne, Australia called for new and better means of pediatric tuberculosis diagnosis, which can be complicated by concurrent ailments such as malnourishment, HIV infection and pneumonia. And, in September, scientists noted that a negative result from the new interferon-gamma release assays cannot definitively rule out tuberculosis in children (Pediatr. Infect. Dis. J. 30, 817–818, 2011). Also in September, another group urged that animal models for tuberculosis “must be designed and utilized in a manner that is also pertinent to the pediatric population” by addressing age-related variance in drug metabolism (Pharmacol Res. 64, 176–179, 2011).

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Image: 1930s US poster via Wikimedia Commons

Massive biobank yields first results with more to come, organizers say

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MONTREAL — In a conference room here at the International Congress of Human Genetics (ICHG), Kyle Lapham loads an app on his iPhone and a four-way split screen of various pieces of lab equipment pops up on the display. “This is a live view of my robot right now in San Francisco,” he says. Lapham, a lab automation specialist at the University of California–San Francisco (UCSF), has the ability to constantly monitor his robot so he can conduct experiments around the clock. And, with this setup, he has managed to run the largest analysis of telomeric DNA to date in a span of just five months.

The project is made possible thanks to the Kaiser Permanente biobank, a massive DNA repository linked to the California health insurer’s medical records. Lapham’s findings about telomeres represent the first results to trickle out of the $62 million project, which has collected 170,000 samples to date, with plans to assemble 500,000 total by the end of 2014. It is the largest such biorepository in the US.

Numerous studies have shown that telomeres, the caps on the end of chromosomes that protect DNA from degradation, generally shorten with age. But, according to Lapham’s data, this is only part of the story. Using a whopping 105,000 samples taken from the Kaiser resource, Lapham showed that older individuals typically have shorter telomeres, but only up to age 75. After that, the average telomere length actually goes up, presumably because those elderly people with the shortest chromosome tips don’t live far into their golden years. He reported the findings at the ICHG last week.

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New fee structure proposed by FDA might lead to more talk

Ever since 1992, when US lawmakers passed the Prescription Drug User Fee Act (PDUFA) to accelerate review of new drugs by the US Food and Drug Administration, industry money has had an increasingly important role in fueling the regulatory agency. In the program’s first year, drug companies paid less than $9 million total to the FDA through the initiative. But in the past two decades the amount has ballooned; this year, the agency anticipates receiving at least $619 million in user fees, composing roughly 65% of its budget for overseeing human drugs.

Despite the torrent of funds, the FDA has still failed to meet its goal of completing the review of 90% of new drug applications within ten months. Industry isn’t exactly pleased with this report card, and they have spent the past year in negotiations with the agency to plan how the fees can be used to make drug review more efficient.

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Ten years on from anthrax scare, analysis lags behind sequencing

By Amber Dance

anthrax.JPGA decade ago this month, a microbiologist at Northern Arizona University, in Flagstaff, took a special delivery from the US government. Federal investigators wanted the scientist, Paul Keim, to identify the anthrax that appeared in letters mailed to news organizations and US lawmakers. Overnight, he used PCR to determine that the anthrax sent was the Ames strain, commonly used in research—but that was just the beginning of a scientific investigation that would catapult the still wet-behind-the-ears science of microbial forensics to the forefront of the criminal inquiry.

Ten years on, Keim’s PCR-based technique seems downright quaint in comparison with modern, speedy DNA sequencing. “In a lot of ways we’ve matured,” says Bruce Budowle of the University of North Texas Health Science Center in Fort Worth. But there are challenges ahead, adds Budowle, who retired in 2009 from the US Federal Bureau of Investigation (FBI), where he was involved in the anthrax studies as a senior scientist in the laboratory division: “In a lot of ways, we’ve got a long way to go… We haven’t grown in the interpretation of the results and what they might mean.”

Overall, the country has improved in many aspects of preparedness. The US government spent $60 billion on biodefense over the last decade, including the 2004 founding of Project BioShield. The $5.6 billion initiative, managed by the government’s Biomedical Advanced Research and Development Authority (BARDA) since 2006, is charged with stockpiling medicines and funding research on new therapies that could be used in instances of bioterrorism. And the spending continues: last month, BARDA awarded a five-year $68 million contract to the New Jersey company Elusys Therapeutics to develop a prophylactic treatment against anthrax.

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Image: via Wikimedia Commons

Businesses ready whole-genome analysis services for researchers

By Trevor Stokes

The cost of sequencing an individual’s entire genome has fallen precipitously over the past five years, from around $100 million for the first personal genome to under $5,000 today when sequencing services are purchased in bulk. In response, a handful companies have started developing whole-genome annotation services that give clinical researchers lacking expertise in bioinformatics the ability to use genomic data for disease-discovery and drug-response testing.

One company, Knome, based in Cambridge, Massachusetts, already offers a package deal. For about $5,000 it will sequence and annotate a genome—with a minimum order of ten genomes. Meanwhile, two California companies, Emeryville-based Omicia and Personalis in Palo Alto, are beta-testing annotation services in academic settings, with future plans to roll out their services in the clinic. Although neither of the two has set its pricing yet, Omicia is expected to release an annotation service for academics and clinicians in early 2012.

Notably, the whole-genome approach to DNA analysis stands in stark contrast to the single nucleotide polymorphism (SNP) method. Whereas the former involves sequencing the full three billion base pairs of DNA in the human genome, the latter typically looks only at around a million single-letter variants at disparate points along chromosomes.

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NEWS FEATURE: Networking for new drugs

By Claire Ainsworth

nm1011-1166-I1.jpgAt first sight, it seems like a rather perplexing experiment. In several hospitals across France, some 60 patients are taking part in a clinical trial to test a combination of three drugs. The first striking thing about this trial is that the drugs have already been approved for human use. The second is that each drug is being given at doses between 10 and 100 times weaker than those usually prescribed. Finally, and most surprising of all, none of the patients suffer from the conditions for which these drugs were originally developed. They all have Charcot-Marie-Tooth disease type 1A, a currently incurable neurological condition that causes muscle weakness and loss of touch sensation, and this trial is the result of a radically new approach to understanding and treating disease.

The approach, called network pharmacology, is very different from the current ‘targeted’ method of drug discovery. To design targeted medicines, researchers typically identify a single protein they believe causes the disease and then design a small molecule that binds exclusively to this target. Network pharmacologists take a very different tack. Rather than focusing exclusively on single proteins or individual biochemical pathways, they look at the bigger picture and target the myriad networks of interactions between the molecules in our cells.

“If we want to increase our range of potential drug targets or increase our chances of having a greater clinical effect, then we need to consider multiple modes of perturbation,” says Andrew Hopkins, who researches medicinal informatics at the University of Dundee, UK.

Network pharmacology is only a few years old but has already yielded promising results in preclinical studies, leading to new possibilities for anticancer drugs and antibiotics against multidrug-resistant bacteria. A number of human clinical trials of drugs created using network pharmacology are also underway, such as the Charcot-Marie-Tooth disease trial, which is the brainchild of the biotech company Pharnext, located just outside Paris. The disease affects one in 2,500 people, and current treatment merely manages symptoms with physiotherapy and devices such as leg braces.

Proponents say that drugs developed this way will be more effective, will have fewer side effects, and will be faster and cheaper to develop than conventional treatments because they sometimes incorporate already approved medicines. But it won’t be easy: there are large gaps in biological knowledge, and many developers are still heavily geared toward supporting the single-target, reductionist approach. “This is a difficult time for the field, which is under a lot of pressure to rapidly deliver new, safe, efficient and affordable drugs,” says Daniel Cohen, head of Pharnext. “It is hard to question the current single-target paradigm, which has probably reached its limits.

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Biologics market predicted to see 6.5% yearly growth in demand, spurred by new cancer and infectious disease therapies

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The demand for biologics such as monoclonal antibodies and vaccines will continue to expand in the US during the next five years, according to predictions in a new industry report. The report, published by the Freedonia Group in Cleveland, Ohio, attributes the predicted annual 6.5 % growth in demand to advances in production technologies and an increasing number of novel disease targets.

“The report analysis is consistent with what we see in market trends, but also in translational research trends,” says Terry Flotte, dean of the University of Massachusetts Medical School and acting head of MassBiologics, a University-associated nonprofit manufacturer of licensed vaccine and biologics.

Biologics are typically engineered biological products such as medicinal proteins. Doctors use them to treat a variety of conditions, such as diabetes, certain cancers and rare genetic diseases like cystic fibrosis.

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