Science from the lab to entrepreneurship

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{credit}AUC{/credit}

Chemist Hassan Azzazy, associate dean of graduate studies & research at the American University in Cairo (AUC), has been working for years on a technology to use nanoparticles of gold to diagnose Hepatitis C, a disease that affects 14.7% of Egyptians. The end result is a cheaper testing technique that takes a fraction of the time the current two-step Hepatitis C test takes.

Today, the AUC announced that after two years of negotiations they have managed to set up a spin-off company whose first business will be producing Hepatitis C diagnostic kits based on Azzazy’s research.

The company, called D-Kimia, is the first spin-off company from a university in Egypt, with the aim to transforming research from laboratories into a profitable business.

“We want to use modern technologies to control modern contagious diseases and cancers,” says Azzazy who’s also the co-founder of D-Kimia. “We start by looking at a problem and we search for a solution to it. Our aim is to find the simplest solution rather than using a certain technology. We are currently working on diagnostic kits for tuberculosis and certain cancers as well.”

The technology targets the oligonucleotides in the virus RNA, at a region that is common across all genotypes of HCV. The researchers are also working on another tool that can determine the specific genotype of virus when an infection is found to determine the best approach for treatment.

Ideally, says Azzazy, the tool can be developed into a cartridge that can be used by doctors directly rather than patients needing to go to for testing elsewhere. “We would like to be able to develop the tool for “near patient testing”, where a doctor can diagnose the patient on the spot. this will help us increase the number of people who know their status by making it easier and more affordable.”

While Hepatitis C is the most widespread disease in Egypt, millions of people carry the virus and do not know their status. Many people get infected through blood transfusions in the healthcare that result from blood donations from unknowing carriers and poor screening in hospitals.

“Diagnosis is part of the plan to control Hepatitis C. It continues to spread in Egypt because people don’t know of they are positive and thus continue to infect others. If they knew, they can be the starting point of controlling the spread of the virus,” says Karim Hussein, CEO of Di-Kimia and co-founder with Azzazy.

Azzazy is hopeful he can share his experience with others so that other universities in Egypt can do the same and produce marketable products from their research. “In my team alone there are many students that I am sure can in the future be entrepreneurs who produce other new companies,” he says.

NME’s weekly science dose (Sep 20 – 26)

The warning bells for obesity may have been ringing in the West for a while now, but they are quickly moving to the developing world. The Middle East and North Africa have one of the fastest growing rates of obesity in the world. While the epidemic is widespread between men, women and children, it would appear that women are disproportionately affected, with some countries in the region showing double the rate of obesity in women than in men.

The reasons for this rapid increase are different from one country to the other, but the shift to a more “Western” diet, coupled with cultural norms that preclude women from engaging in exercise in public and promotes sedentary lifestyles. In Saudi Arabia, for example, a mere 2% of women take exercise. Researchers argue that governments should be doing more to promote healthy lifestyles and prevent and decrease obesity, which can lead to various chronic diseases such as diabetes and high blood pressure. This would be especially relevant to Gulf states where these chronic diseases are widespread.

And while still in the Gulf region, researchers working on understanding the Middle East Respiratory Syndrome Coronavirus (MERS-CoV), which has had many people worried especially with Hajj season approach, found that the transmission of the virus may be more complicated than previously thought.

Is it from bats? Or camels? Or something completely different? While we are not any closer to knowing the host or source of the virus, researchers have found various variations when analysing the virus genomes isolated from 21 patients from Saudi Arabia. These variations are too big to be the result of replication errors, says the researchers, and could probably involve multiple animal to human infections.

Finally, to end on a slightly more positive tone, researchers have managed to come up with an algorithm that may help screen for cancers. DNA is wrapped around proteins called histones. Sometimes, enzymes may modify histones causing the cell to stop producing certain proteins that can silence cancer. Researchers from Saudi Arabia and France came up with a model that can detect these changes effectively, which could be useful in designing anticancer drugs to undo these cancerous changes.

Beyond the hood

The Intergovernmental Panel on Climate Change (IPCC) will release its fifth assignment and, to no one’s surprise, will stress again there is a 95% probability that human activities are responsible for climate change. This is an increase from the fourth assessment’s 90% – but just reiterates what we already know. The past three decades have seen the Earth’s surface increasingly warmer than anytime before.

“Observations of changes in the climate system are based on multiple lines of independent evidence. Our assessment of the science finds that the atmosphere and ocean have warmed, the amount of snow and ice has diminished, the global mean sea level has risen and the concentrations of greenhouse gases have increased,” said Qin Dahe, co-chair of IPCC Working Group I in a press release.

In a Nature editorial for a special focusing on the IPCC, the writers argue that, while the IPCC has done a tremendous job so far, it may be time to retire the mega assessments and switch to smaller, faster reports that address the direct issues that can help policymakers. The five year wait between each assessment may not be the best model going forward, they argue, since by the time the reports are out they are already old news.

Whatever the model chosen going forward, we can be sure of one thing: This is the start of a new round of loud bickering between politicians who will, most probably, again ignore the science.

Arab scientists learn desert agriculture techniques in China

wheat MARSWhile the Middle East may have been the cradle of agriculture, it isn’t the most friendly area in the world when it comes to growing plants. Well over two thirds of the area is harsh desert, making growing enough crops to feed a rapidly increasing population one of the trickiest challenges Arab countries face.

Sixteen researchers from Yemen, Sudan, Libya, Palestine and Morocco have spent a month in China as part of a training programme in the Chinese autonomous region of Ningxia Hui. The programme teaches Arab scientists techniques used in Ningxia to fight desertification, which has successfully reduced its deserts from 1.65 million hectares in the 1970’s to 1.18 million hectares in 2010, according to China News.

The scientists are then expected to adapt these techniques to support agriculture back home. These range from using chemicals or vegetation to stabilize sand dunes to developing drought-resistant crops that can become lucrative businesses.

The Anti-Desertification Technology Training Program for Arab Countries has been held annually since 2006 and has trained over 100 scientists from the Arab world till now. However, it is not clear how effective it has been in transforming agriculture in the region. In fact, agricultural techniques used in most Arab states in the Middle East have remained unchanged for hundreds of years.

The International Center for Agricultural Research in the Dry Areas (ICARDA), which was headquartered in Aleppo, Syria until it had to move to neighbouring Jordan due to the civil war there, has been working for decades in the region to research and educate farmers on new ways to increase their yield and counter droughts. They have produced various strains of drought-resistant and disease-resistant wheat that have been pivotal in the harsh deserts of the Middle East.

 

NME’s weekly science dose (Sep 5 – 19)

Since we missed last week’s roundup, we have a double week update today so it’s slightly longer than normal.

Researchers from Egypt and Saudi Arabia are collaborating to study bacteria that live in brine pools in the Red Sea. High temperatures, salinity and concentration of heavy metals, coupled with a lack of oxygen, make the brine pools among the most hostile environments in the world.

While very few organisms can live in these conditions, some bacteria thrive there, and are thus producing hardy and unique enzymes. Researchers are isolating these enzymes to use to remove pollutants and toxic chemicals which can have wide industrial uses. They have already found two unique enzymes and the search is on for more.

Back on land, electricians may be taking a closer look soon at spider silk, which is one of the strongest and toughest substances in the world. Researchers have managed to come up with a technique to coat spider silk with conductive carbon nanotubes. This could pave the way to using spider silk to create electric wiring in electronics.

And speaking of electronics, researchers are closer to realizing lithium-oxygen (Li-O2) batteries, which can store more energy than any other battery so far, by coming up with a new cathode architecture for the cells. This helps solve the main problem of Li-O2, which is having a higher voltage during charging, which can damage the battery.

Researchers are also taking a closer look at magmatic systems to understand how crystals precipitate in them. They found that, like aqueous solutions, nanoparticles start forming long before the actual crystals precipitate. This makes it easier for the formation of crystals afterwards as they grow from these nanoparticles.

Finally, we go back to the discovery of a Higgs boson like particle at the Large Hadron Collider last year. Physicists were excited by the discovery, but are finding trouble adapting its properties to the standard model of particle physics. Thus theoretical physicists from Zewail City of Science and Technology are suggesting a modified version of the standard model that contains an new particle called an “octet scalar” which can explain the faster than expected decay of the Higgs particle into two photons.

Beyond the hood

Stem cells have held so much promotion for medicine for many years now, but have come with a fair share of ethical issues. By removing a single protein, researchers for the first time are able to convert cultured skin cells into stem cells with very high efficiency.

In the past, researchers have been able to reprogram cells to become pluripotent stem cells by the addition of four genes. This only converted less than 1% of the cultured cells, however. Working with a line of specially engineered mouse cells that normally had a conversion rate of 10%, the researchers, who published their findings in Nature, were able to bring it up to nearly 100%.

On other medical news, do you hate those annual flu jabs before winter? Well, you may be in luck. Researchers are looking into a vaccine that may require a single jab to give protection from all different strains of flu.

Flu vaccines basically trigger the formation of antibodies that bind to a protein in the surface of the virus that helps it infect other cells to stop the spread. However, this protein mutates rather fast, which is why vaccinemakers need to create a new vaccine every year that targets the protein on current strains. And new viruses that mutate to make the jump to humans from birds or animals add another level of complication and trigger fears of pandemics (which we have had a few of in recent years).

Researchers hope to overcome this problem by using “broadly neutralizing antibodies”, which can bind to almost all the different variants of the protein, as discussed in Science. There are challenges, but scientists are working to tackle those, hopeful to produce what would be the solution to all influenza.

Refining the dates of Ancient Egypt’s first dynasty

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What we know of the history of the First Dynasty of Ancient Egypt, which was the first state formed in Egypt about a thousand years before the building of the first pyramids, has largely depended so far on archaeological findings of ceramics. Archaeologists studied the evolving style of ceramics used in burial chambers to determine the order of the kings and queens of the dynasty, which offered a rough estimate at best.

Now, researchers from the Research Laboratory for Archaeology at the University of Oxford have used radiocarbon dating to determine a more accurate estimate for this little known period of Egyptian history, publishing their findings in the Proceedings of the Royal Society A. They used radiocarbon dating on samples of hair, bone and plant excavated from the tombs of the monarchs and the surrounding region to determine their age.

By combining the radiocarbon dating and archeological evidence, the researchers used a mathematical model to produce more accurate estimates of when the state was formed, and when each king or queen came to power. They also found that the Predynastic period, which is when inhabitants started settling along the River Nile and focusing on agriculture before the formation of the first state, was shorter than previously thought.

The first king of the dynasty, King Aha, succeeded King Narmer (Menes) who is most credited with unifying Upper and Lower Egypt for the first time. His reign started between 3111 and 3045 BC. Additionally, the Predynastic period, which was previously thought to have started somewhere around 4000 BC, has been refined in the new study to ~3800 BC. This shrinks the period between concentrated agriculture and the formation of the state to 600 – 700 years. This is in contrast with neighbouring civilizations such as Mesopotamia, where there were between four and five millennia in the transition from agriculture to a centralized state. Despite being geographic neighbours, the rise of political centralization between the two regions took different paths.

The researchers dated the reigns of all eight kinds and queens of Egypt’s first dynasty: Aha, Djer, Djet, Queen Merneith, Den, Anedjib, Semerkhet and Qa’a.

The radiocarbon dating has found a rather long period between Djer and Djet that raises some questions. This would suggest that Djer reigned for over 50 years. This long period of rule may be unlikely, however, and could mean there are other kings or queens missing or ” be the result of a political hiatus,” as the paper suggests.

Researchers have used radiocarbon dating before on ancient Egyptian artefacts from the Old, Medium and New Kingdoms and managed to settle some differences that archaeologists had on the order of kings.

Students suffer rising tuition fees

Young people in the Middle East now have more options for high quality university education than were available 10 years ago. This, however, has come with steeply rising tuition fees that often strain the budgets of families eager to secure a  better future for their children.

In September 2012, students at the American University in Cairo (AUC) for the second year staged several protests in their campus to protest the annual 7-9% increase in fees. AUC is already one of the most expensive universities in Egypt, with tuition fees often surpassing LE120,000 (US$1,200) per year. The students demanded a cap to the increase which many said became unaffordable for them or their families. The protests closed the university for 10 days until a deal was brokered between the administration and the students.

“I want a good education, but the bulk of families in Egypt cannot afford the fees they collect every year. My family can hardly make ends meet because of this even though I have a scholarship. Without that I would not have been able to continue,” says a student at AUC who preferred to remain anonymous. AUC has announced this year that 15% of its tuition income this year went to provide around 60% of the students with some form of scholarship or financial aid.

AUC was not the only university in Egypt to have protests against rising tuition fees. Students in the Modern Science and Arts University also staged protests, boycotting lectures and classes.

Students in universities in the United Arab Emirates, who have also been complaining of rising tuition fees, have been luckier than their Egyptian counterparts. Due to the number of complaints received, the Abu Dhabi University (ADU) has frozen its tuition fees for this year, according to Gulf News. The American University of Sharjah (AUS) has also decided not to increase tuition fees while increasing its financial aid programme, according to AME Info. According to Ali Shuhaimy, AUS Vice Chancellor for Enrollment Management, undergraduate students pay around 80,000 AED annually (~US$21,780) which “is in line with most international universities of our standing, both in Europe and the US,” he adds.

Hajar Al Safty, a senior student at the AUS, however, tells Gulf News that without the financial aid she receives she would never be able to make it. “I wouldn’t be able to continue in the UAE, if I wasn’t granted financial aid. It would have been very hard because it is extremely expensive.”

“I guess I can accept that good education should be costly, that’s the same everywhere. The problem is that when the fees are so expensive it becomes selective, only available to richer people who can afford this, rather than those who are really good,” adds the AUC student.

NME’s weekly science dose (Aug 30 – Sept 5)

Jordan and Syria capture the limelight this week. The Royal Society’s Atlas of Islamic World Science and Innovation reports on Jordan’s investment in science, technology and innovation, highlighting the need to overhaul its education system.

Specifically, the report underlines the need for Jordanian universities to include entrepreneurial and commercial skills in their curricula. Nevertheless, the Royal Society lauded Jordan’s investment in science and technology, though other critics noted the lack of R&D in high-risk potential areas of growth. Get the full story here.

In Syria, we highlight the conflict’s ongoing toll on ancient monuments and artefacts. While gathering accurate data is difficult in the midst of all the violence, archaeologists and citizens have been trying to document the destruction of historical sites. For instance, an archive of damaged monuments is being compiled by academics and the public in a dedicated multi-lingual Facebook page called Syrian Archaeological Heritage Under Threat.

The page is hoped to help future restoration missions. Read more about this here.

Beyond the hood

The question of whether you can “train your brain” to stave off some of the cognitive decline associated with ageing has been a recurring one. Can cognitive exercise equipment keep our brains nice and cognitively buff? And might video games be the ultimate brain work out?

A new study from the University of California suggests that this may possibly be so. The researchers behind the recently published study designed a video game called NeuroRacer that involves two tasks: pressing a button only when a blue circle appears on the screen and not reacting to other symbols that pop up, all the while using a joystick to control a car zooming down a virtual track.

The experimenters had 16 healthy older adults (aged 60-85) take the game home and play it three times a week for a month. When these subjects returned to the lab, they were found to perform better than untrained 20-year-olds. They also maintained these skills for 6 months after the training without any other further practice.

Beyond the game, these subjects also saw improvements on certain memory and attention tests, suggesting that NeuroRacers changes key mechanisms in the ageing brain. Here’s a link to the study.

Astronomy to inspire young Emiratis

Moon Mohammed Yahia

{credit}Mohammed Yahia{/credit}

Hasan El-Hariri has been fascinated by space for all his life. He bought his first telescope when he was 16 and, after using it to look at the moon, he was hooked on astronomy. This love drove him to start the Dubai Astronomy Group in 1993 and, since then, it has grown from a handful of people to some 3,000 members. Now, El-Hariri dreams of inspiring young children to look at the sky and find that same fascination that drove his whole life.

Catch my short interview with El-Hariri below, where he talks about his work and the Dubai Astronomy Group, and his hopes for the future of the group. Below that you can watch an interesting short documentary about El-Hariri and his work.

 

1) Why did you decide to start the Dubai Astronomy Group (DAG) and when did it start?

Astronomy is a collaborative science. You cannot work alone. To increase our knowledge we have to cooperate and unify ourselves into an organized entity. We also found that there is no organization available in the United Arab Emirates or other Arab countries that is serving astronomy in any way which satisfies our needs.

Not to mention that most of the astronomy organizations around the world are local oriented and do not often support each other in a progressive manner.

2) How successful have you been so far in inspiring young children to look at the stars and be interested in astronomy?

We have many activities, over 30 every year, most of which address schools and the education sector. We are seeing so many children joining DAG with their families, and most of our general activities are family-oriented. We have also started an astronomy club in schools initiative in 2006. We now have many schools working closely with us as partners.

We are active partners of Knowledge and Human Development Authority (KHDA) [the educational quality assurance and regulatory authority of Dubai], and provide many products to schools, such as stargazing events, lectures and galleries.

We are planning to open an Astronomy Kids Clubs soon, which will provide more focused products and services for children.

3) Do you have any plans of spreading DAG across the UAE and maybe, in the future, link up with other groups in other Arab countries to have a regional Arab Astronomy Group?

DAG is named after Dubai due to our struggling start, but we are definitely not restricted to Dubai. We are available everywhere in UAE, not to mention we have many friends and partners around the world and in Arab countries.

We are now starting to work on an International Astronomy Group, where we will link up networks of astronomy clubs and group around the world, and we are inviting everyone to join us in this effort. We believe that, together, we can do miracles.

4) The DAG members have increased from four to 3,000 over the past 20 years. What do you plan to do next?

Our target is to have one million members by 2015. It is a very big number but it’s only a start. We have an aggressive marketing plan, which will support our international vision very strongly. We hope to become a world leading astronomy organization, which can support amateur astronomers and fulfill their dreams.