Reactions – Zachary Aron

Zachary Aron is in the Department of Chemistry at Indiana University, Bloomington, and works on the development of molecular assembly lines as versatile tools for chemical synthesis.

1. What made you want to be a chemist?

I’ve always wanted to be a scientist — the world around me fascinates me, and I’ve always wanted to look closer… But that doesn’t really answer the question, does it? My first inkling that chemistry was the right science came in high school under the gifted tutelage of Frank Cardulla, who helped me to understand that chemistry was the only science where you could really grasp what you are doing with a truly satisfying level of detail. Biology, despite its awesome power and the amazing advances of the past decades, is still too much of a mystery. Physics is so understood that you need detailed equations between you and the science, making it too distant. Chemistry… ah, chemistry, now thats a science you can sink your teeth right into. We can almost picture the molecules in our heads. We can predict their flow and motion. We can finesse them together and we can make them flow — how could it not have been chemistry?

2. If you weren’t a chemist and could do any other job, what would it be – and why?

That’s an easy one. Anyone who knows me can probably guess — when I walk into a party, I typically greet the dogs and cats before I notice the people. If I couldn’t be a chemist, I would be a veterinarian. Making sick pets healthy and keeping them happy would make my day. Helping them move on to a place of less pain would hurt, but the help I could give would really balance it all out.

3. What are you working on now, and where do you hope it will lead?

At the moment, our laboratory is focused on the development of new synthetic methodologies with the long-term goal of applying them in complex molecule syntheses. One focus is the development of biomimetic catalysts that activate amines in a manner similar to that of pyridoxal-5’-phosphate (PLP). Our hope is to identify a simple and accessible class of organocatalysts capable of dramatically simplifying the way chemists work with amine-containing compounds; eliminating protecting groups and accelerating chemical synthesis. We hope that this work will simplify the industrial synthesis of amine-containing compounds and broaden access to unusual derivatives of biologically active natural products.

4. Which historical figure would you most like to have dinner with – and why?

John Muir. I’ve spent a great deal of time exploring the landscape of the American wilderness and have always been struck by its beauty. John Muir was the powerful voice that pushed to protect so much of what we still have — I’d love to thank him. I’d also like to hear a few of his stories, his experiences in the wild would be remarkable to the point of legend.

5. When was the last time you did an experiment in the lab – and what was it?

Gosh, not that long ago (can’t be specific, my fiance might be reading this…). What was the experiment? The answer is a bit embarrassing… the last experiment I ran in the laboratory was a follow-up to a reaction that had gone south on me: when running a simple Schiff-base formation, I had gotten a quantitative yield of an unanticipated product (you’ll see this paper soon enough); anyway, the last experiment was a follow-up that changed the pH of the system to successfully make the desired Schiff-base without any more shenanigans.

6. If exiled on a desert island, what one book and one music album would you take with you?

The music album: New Moon, by Charlie Ortman — when exiled, the first thing I would miss would be my family, so an album by my uncle would at least be a soothing reminder of home.

The book: Hmmm… that’s a hard one; I’m a voracious reader, and there are few books I can think of that would both interest me and last any period of time. Possibly 100 Years of Solitude by Gabriel Garcia Marquez since its a book that one often becomes lost and confused when reading. However, much like the album, I’m gonna need comfort food when stranded on a desert island, so it would most likely be Dune by Frank Herbert — an amazing book with strong links to my childhood.

7. Which chemist would you like to see interviewed on Reactions – and why?

Matthais Brewer at University of Vermont — to be honest, he’s a good friend and I’d be curious to see his answers to these questions! Plus his work with diazonium salts has long fascinated me, placing a renewed emphasis on an old but important field.

Putting the chemistry into sci-fi: Episode 3

Yesterday I suggested a few book titles and short stories for those interested in chemistry-themed science fiction. In this final entry, I’ll dig up some film and TV suggestions.

In the written word at least, several authors have used chemical concepts as the basis of smart sci-fi. This is much less the case on TV and at the movies. I think this is because books have space to develop themes, and to provide any necessary background information. Sci-fi readers in general are also more receptive to taking on fairly abstract scientific concepts — it is, after all, part of the attraction of the genre. But films and TV need to have an immediate impact on the widest possible audience, and so difficult concepts are often ignored in favour of whizz-bang pyrotechnics and special effects. Not much room for chemistry, then (apart from in the pyrotechnics).

But examples do exist. David Katz’s online list of chemistry-related sci-fi includes a section on films, and I recommend that you take a look. From his selection, a special mention goes to The Man in the White Suit, a British satirical comedy from 1951 about a man who invents a dirt-repellent polymeric fibre. The properties of the fibre and its ramifications for the textile industry drive the entire plot.

Chemistry in television sci-fi is also uncommon, and tends to crop up as an aside, and/or as a bad thing. MacGyver obviously wasn’t science fiction, but chemistry did at least come to the rescue on several occasions — such as when our hero breaks open a lock with ice cubes and a light bulb, makes nylon (!) and extracts vanadium from a poison (I have no idea why or how he does this). I also enjoyed a spoof educational movie that appeared in an episode of The Simpsons: “You said you wanted to live in a world without zinc, Jimmy. Well, now your car has no battery.”

But there’s only one TV sci-fi series that I know of (feel free to correct me) that truly used chemistry as the lynchpin of a plot: Dr Who. In the 1968 story, The Krotons, a race of people known as the Gonds were enslaved by the eponymous aliens. The Krotons prevented the Gonds from learning about chemistry, mostly because the aliens’ Achilles heel was sulphuric acid. But the Doctor teaches the Gonds how to make the acid, which they then use to destroy their overlords. Fanciful and simplistic, I agree, but at least the programme makers attempted to show the importance of chemistry in a sci-fi setting.

So that’s it for my round-up of chemical sci-fi. It’s certainly a fun topic, but I genuinely think that the lack of chemistry in science fiction is a missed opportunity. Perhaps if there was more, it would generate a greater interest and understanding of chemistry in the real world.

Andy

Andrew Mitchinson (Senior Editor, Nature)

Putting the chemistry into sci-fi: Episode 2

In my previous blog, I wrote about the lack of strong chemistry themes in science fiction. Here I’ll suggest a few resources and book titles for those who want some chemical spice in their sci-fi – maybe this will be useful for summer holiday reading.

Last time I mentioned a well-attended ACS symposium on ‘Chemistry and Science Fiction’ that was held in 1992. Well, that meeting spawned a book of the same name written by Jack H. Stocker (who sadly died recently – you can read his obituary here). The book collects together papers from the symposium, offers several suggestions for further reading, and seems to be the essential guide to the area. Well worth tracking down for sci-fi aficionados.

Some online reading lists are also available, again as a result of the 1992 meeting. The first one (found here) was compiled by David A. Katz, who describes himself on his website as a chemist and educator. I quite like the sound of Asimov’s The Last Question, which asks whether entropy can be reversed; and also Omnilingual by H. Beam Piper, in which the periodic table becomes a Rosetta Stone to decipher the writings of an ancient Martian civilization.

Also on Katz’s site is this reading list, compiled by the author Connie Willis. This categorizes books into several different subject areas, including chemistry, and is a good primer for anyone looking for some genuine science in their sci-fi. Both Katz and Willis believe that sci-fi can be a powerful educational tool — when coupled with relevant science articles, students can consider and discuss the plausibility of the science in the fiction. Quite a nice idea, I think.

Finally, a couple of other suggestions for books that I’ve come across that don’t make it onto the above lists. The Periodic Table of Science Fiction by Michael Swanwick is a collection of short stories, each based on a different element of the periodic table. This was originally published online, but is now available in print. And if you like your sci-fi with a tint of fantasy, try Stanislaw Lem’s Mortal Engines. This includes a story called Uranium Earpieces, in which a race of robots are forced to incorporate uranium into the alloys of their bodies, to prevent them from forming large gatherings — if too many of them come together, they reach critical mass and explode…

Chemistry in TV and films will be discussed in Episode 3 of this blog, the final entry of this trilogy.

Andy

Andrew Mitchinson (Senior Editor, Nature)

Materials Girl: Catching up

Posted on behalf of Materials Girl

Previously, summer class and the flurry of conference posts have been an excuse for my lack of posting. But, like Neil, I need to get back to it. So much has happened in my academic world since my last post! Does a personal Twitter feed with periodic chemistry references count as updates?

In May, we were drowning in midterms and the doom of upcoming finals. Merely weeks later, I discovered that my last chemistry exam was over and I was running off to multiple commencements, amidst moving out of a surprisingly stuffed little dorm room. Somewhere between the madness and sentence fragments, it suddenly hit me that I had GRADUATED.

Where did the last four years go? My memories are of sweat, blood, and tears – plus a few friends for eternity and a few classes that I truly enjoyed. (Admittedly, it could be argued that I liked any class that was relatively easy – whether matsci, English, or chem. This raises the issue of class content versus classmates and professors, but that topic is best left to a future post.) Of my most notable favorites were solid state and organic chemistry, both lecture and lab courses – despite the latter being slightly ruinous to my GPA. But hey, we have to start learning lab skill somewhere! Plus, it was fun to conjecture on how the professor really tested all the lidocaine we synthesized… And tetraphenylcyclopentadienone was such an impressive sounding name and such a pretty, shiny purple…

Not to marginalize all the toil, but do I look back and wonder what sort of lasting material those classes really taught. (It likely doesn’t count that I’ve been able to fit the allotropes of carbon into “regular” conversation.) My transition from high school to university was very profound; the difficulties of my first term eclipsed all previous academic experiences. Now having jumped those hurdles and refined my abilities, as with high school, my college education seems to lose value. Is undergrad just like [American] high school, where you’re learning to learn? How much of the foundation do we actually retain, forget, cram in for prelims, and then forget again?

It already seems far away, even though graduation is not even two months past.

Putting the chemistry into sci-fi: Episode 1

Wouldn’t it be refreshing to find some science-fiction in which the key plot developments revolve around a chemical concept? It doesn’t seem like much to ask, and yet it’s really difficult to find sci-fi that genuinely embraces chemical themes. There does seem to be an appetite for such material, at least among chemists — an ACS symposium in 1992 on chemistry in science fiction was apparently standing room only.

That’s not to say that chemistry doesn’t exist in sci-fi. In some respects, it’s endemic, given that many of the devices commonly found in the genre must be made from high-performance materials. And nanotechnology certainly fires up authors’ imaginations — more grey goo or nanobots, anyone? But as Andrew Sun mentioned in this thoughtful blog a while back, these ideas are never fully expanded, they’re just convenient devices that allow the protagonists to do wonderful things.

I think that the lack of chemical science fiction reflects the fact that the subject is intrinsically quite abstract. Sci-fi ultimately hooks people because of what happens to the characters, whereas chemistry is all about molecules and atoms. How do you build a plot in which the discovery of a new catalyst, for example, somehow permeates and drives all the actions and emotions of the characters? It’s not impossible, but neither is it easy. This seems to be backed up by Nature’s own sci-fi section – the Futures page – where apparently we haven’t had any stories submitted that have strong chemistry themes.

The good news is that chemical science fiction does exist, and indeed some of it has been written by all-time greats of the genre. Admittedly, much of what I’ve found are short stories, rather than full novels or films —again implying that authors have difficulty stretching chemical concepts into lengthy plots — but there are some real nuggets out there that are worth tracking down. I’ll go into more detail in Episodes 2 and 3 of this blog. In the mean time, for a more in-depth and scholarly appraisal of chemistry in science fiction (and in fiction in general), Chemistry World subscribers should read this wonderful article from Phil Ball.

Live long and prosper,

Andy

Andy Mitchinson (Senior Editor, Nature)

Reactions – Kalai Saravanamuttu

Kalai Saravanamuttu is in the Department of Chemistry at McMaster University, and works on the fundamental properties and applications of nonlinear light propagation in photochemical media.

1. What made you want to be a chemist?

Chemistry first appealed to me in a great deal due to my high school teachers in Port Moresby. They threw open the doors to a molecular underworld that ruled the properties and transformations of matter. The decision to pursue chemistry as a career probably took form during my final undergraduate year at McGill University. For my senior thesis, I worked on optical chemical benches – biosensor waveguides with enhanced sensitivities based on surface enhanced Raman spectroscopy. First within the narrow scope of this project and then in a much broader context, I saw chemistry as a link between different disciplines – an interpreter between the natural sciences – that opened exciting, creative approaches to research.

2. If you weren’t a chemist and could do any other job, what would it be – and why?

I would work for an organisation that actively promoted the rights, health care and education of children. The roles and responsibilities of scientists in human rights have been demonstrated by initiatives such as the AAAS Science and Human Rights Program. My hope in working full time in this field would be to make a meaningful and sustained even if minute contribution to these critical issues. I feel that such work would also provide incredible opportunities to learn from the lives of a rich diversity of people.

3. What are you working on now, and where do you hope it will lead?

My research group looks at the way coherent and incoherent light behaves when it propagates through media that undergo photochemical reactions. We find that these systems elicit a range of nonlinear forms of light propagation such as self-trapped beams, optical lattices and spontaneous pattern formation. Such phenomena hold promise in the development of active photonics devices that provide precise control over the propagation of light signals.

4. Which historical figure would you most like to have dinner with – and why?

I would like to dine with Sir Chandrasekhara Venkata Raman. It would be wonderful to hear a personal account of the sequence of events that elucidated the subtle yet powerful Raman effect and to also get his perspective on the interesting times in the early twentieth century during which his experiments were carried out.

5. When was the last time you did an experiment in the lab – and what was it?

About three weeks ago just before the birth of my daughter and when everything seemed to be full of promise. I worked with my undergraduate student to see how multiple self-trapped laser beams behaved as they travelled through a polymerisable gel. We found that the beams merged together and separated periodically as they propagated through the photopolymer. We are now trying to find the mechanism underlying this behaviour.

6. If exiled on a desert island, what one book and one music album would you take with you?

Assuming that I was not to be rescued any time soon, I would probably take On the Genealogy of Morals by Nietzsche – because I am continually trying to read and understand this text. In terms of a music album (and assuming that i-pods were forbidden), it would be a coin toss between a Verdi collection and a mix of Tamil popular songs spanning the past six decades by composers Viswanathan, Ilaiyaraaja and Rahman.

7. Which chemist would you like to see interviewed on Reactions – and why?

I’d like to see Prof. David L. Andrews from the University of East Anglia. His group uses a powerful approach based on quantum electrodynamics to understand the interactions of molecules between themselves and with light.

Reactions – Aaron Wheeler

Aaron Wheeler is in the Department of Chemistry at the University of Toronto and works to develop miniaturized systems to solve problems in chemistry, biology, and medicine.

1. What made you want to be a chemist?

I see that many of the other interviewees had formative experiences with chemistry sets, but if I am honest, I have to admit that ended up in chemistry a bit by accident – I enjoyed the classes and labs and my interest was encouraged by supportive teachers along the way. If we played it over again a few times, I could see the results going a different direction. That said, now that I am here – I love it. Regardless of whether the questions you are interested in are in physics, biology, medicine, engineering, food, the environment, etc., chemistry is centrally important. It’s a great platform from which to dabble in almost anything.

2. If you weren’t a chemist and could do any other job, what would it be – and why?

Life is interesting, and there are too many options to consider. Staying within science… I think I would like to be a neuroscientist. The link between the chemistry and biology of the brain and thoughts, feelings, and memories is such a fascinating story, one that’s just beginning to be understood.

3. What are you working on now, and where do you hope it will lead?

My group and I are developing miniaturized “lab-on-a-chip” systems relying on microfluidics, and we’re applying them to a bevy of different applications, including the development of tools for analyzing proteomes, methods for growing, culturing, and assaying rare cell populations in multiplex, and low-invasive techniques for screening patients for risk of developing cancer. What I love about this field: we get to dabble in all kinds of interesting areas – collect clinical samples one day, don a bunny suit and fabricate devices in the clean-room the next, fix the $&%^!! mass spectrometer the day after that, and on and on. I get bored with routine, and this job is anything but that.

4. Which historical figure would you most like to have dinner with – and why?

These are hard-hitting questions… I think for this one I might go with Charles Darwin. He was obviously a source of some wide-ranging, transformative ideas, but he was interested in problems big and small. Apparently, he had a great passion for earthworms (!), going as far as to evaluate their behaviour over several decades by sprinkling markers on the ground to measure worm-driven soil turnover rates. I imagine that with some coaxing, a conversation with Charles D. would cover almost any topic under the sun (or under the soil, as the case may be).

5. When was the last time you did an experiment in the lab – and what was it?

When starting the lab a few years ago, I did a bit of work, mostly with instrument installation and setup. Since then, I have been a desk-monkey – grants don’t write themselves, you know! I do love being involved in the experiments, though, and (to my students’ dismay, I fear) I try to participate in experiment planning, execution, and interpretation as much as possible. This is what makes the job so much fun! But it’s important to remember that the (science) work done in academia is 100% driven by students. I am not sure that this is recognized by people outside of the academy.

6. If exiled on a desert island, what one book and one music album would you take with you?

The Sceptical Chymist does not pull punches with these questions! For a book, I would likely choose one of Jared Diamond’s tomes on the evolution of peoples and societies — I learn new and interesting ideas each time that I go back to them. For music? I guess I would stick to my Southern roots and would pick a Skynyrd album, but this question is outdated, right? Can’t I just bring my ipod which is loaded with ‘every song I have ever listened to’TM?

7. Which chemist would you like to see interviewed on Reactions – and why?

Chemists who would give interesting answers to these questions include Dick Zare at Stanford and Jonathan Sweedler at Illinois.

Educating Excimer: Room to fail

Posted on behalf of Aaron Finke

Chemistry lab courses should focus more on method and problem-solving rather than specific techniques, with room for students to “fail” so they can learn from their mistakes. The best approach is to use open-ended experiments that require students to formulate conclusions other than “it worked” or “it didn’t work.” However, these experiments usually require a significant time commitment on the instructors’ part, and so these kinds of experiments are usually only found in labs for chemistry majors with small student enrollments.

My undergrad’s senior capstone project for chemistry majors is a particularly good example of this kind of open-ended science project. In our instrumental analysis lab, teams of three or four were given an item the coordinators purchased from the store — a calculator, a bottle of glue, etc. We were then given questions to answer, such as the identity of the polymer in the packaging, trace metal analysis of the can, the propellant, and so on, which required us to use the instruments and techniques we learned in the semester. Since nobody knew the “correct” answer, sufficient statistical analysis was required to pass muster.

This project was one of the highlights of my undergraduate curriculum, but it required considerable time and effort on the TA’s part- and we had 5 TAs for about 30 students. How can large universities undertake such a project in a lab class with 500 students and 10 TAs?

Melanie Cooper, a professor at Clemson University, has spearheaded a program there to develop a high-enrollment laboratory course that is open-ended and focuses on method and reasoning rather than techniques. In a 2006 J. Chem. Ed. paper (vol. 83, p. 1356), she describes an example project for an organic lab. Each student was given an unknown, and after characterization of the unknown, the student would have to find a procedure for nitration of that unknown using the chemical literature, and justify that procedure before attempting it. Students monitored the reaction by TLC, and noticed that some unknowns reacted faster than others, and some even decomposed if the temperature was not controlled. Students could then collaborate and determine what factors led to such a disparity in reactivity, drawing from concepts learned in lecture and from each other.

This is the kind of project that requires students to think about what they are doing, rather than simply read off a recipe they are given. Furthermore, in such an open-ended project course, there is room for experiments to fail — a luxury that “cookbook” labs, scrambling to finish as many experiments as possible in a semester, do not always have.

Science is a humbling process — most scientists expect some portion of experiments they perform to fail. However, in today’s “cookbook” labs, failure to perform the experiment adequately leads to a lower grade in the course, leading many students to believe that all practical science is based in absolution — when an experiment fails, it is your fault, no matter what. (Then some of these undergrads join research labs, and have to learn the hard way that cutting-edge science doesn’t work like that!) Open-ended lab experiments give students the opportunity to perform “real” science in a more controlled environment.

Welcome to the periodic table Copernicium!

Element 112 has a name! Taken from Nicolaus Copernicus, the man who said that the universe didn’t revolve around the Earth, and that we were actually spinning round our star, the Sun.

Element 112, first discovered in 1996 by the group of Sigurd Hofmann at the centre for heavy ion research in Darmstadt, Germany has been in want of a name since it was officially recognised by the International Union of Pure an Applied Chemistry last month.

Hofmann wanted to buck the recent trend of element naming to come out of his lab – which gave us a rush of elements named after fairly modern-era scientists: Bohr, Meitner, Roentgen, as well as a couple named after places nearby: Hess and Darmstadt.

“We wanted to make a step into history and we looked for people who changed our thinking,” Hofmann told me. Apparently there were other candidates but Hofmann was being coy about naming them.

Copernicium (with the middle ‘c’ pronounced as a ‘ts’) won’t be officially official until the IUPAC has gone through its lengthy procedure of checking the name and suggested abbreviation – more of which shortly – and making the suggested name known to the public for six months.

As for that abbreviation, Hofmann’s suggestion is Cp. This, of course, to you chemistry geeks out there, is also a commonly used abbreviation for the cyclopentadienyl group (a ring of five carbon atoms with five hydrogen atoms).

An alternative would be Cn – but Hofmann is worried that that looks a little too much like Cu, which has already been bagsied by copper.

And next? Well, Hofmann has already begun his search for element 120, and hopes that this will give him another go at choosing a name. The next chance to name an element is likely to be a group at the Joint Institute for Nuclear Research in Dubna, Russia, where IUPAC is considering claims that they made elements 113 and 115, and possibly even 118.

Reactions – Nick Fisk

John D. (Nick) Fisk is in the Department of Chemical and Biological Engineering at Colorado State University and works on developing new chemical tools for understanding and manipulating biological systems.

1. What made you want to be a chemist?

I was very lucky to grow up in an old farm house; my back yard was woods and a stream. I don’t think that a better toy will ever be invented for a 5-year old than a stream full of living things. I was in the water collecting animals or building dams and locks nearly every day. I think that environment and the observations that one can’t help but make about how it works, how it changes, and how it can be made to change set me on the path toward science. I remain interested in all of physical science and am working in an area between chemistry, biology, and engineering. Ultimately, I am interested in how the world works on a chemical level.

2. If you weren’t a chemist and could do any other job, what would it be – and why?

If I hadn’t become a chemist (or some other flavor of scientist), I would be an architect or landscape architect. I have always been interested in design. My work deals with the design of molecules and nanostructures, but I would also enjoy assembling buildings or gardens.

3. What are you working on now, and where do you hope it will lead?

My lab is interested in using chemistry and biology together for the construction of materials and biotechnologies useful in medicine. Toward these ends, we are working to add new amino acids to the genetic code; we will use these non-natural amino acids, along with protein engineering, to improve the utility of virus particles as the building blocks of advanced materials. I hope that our work will contribute on a basic level to the ability to integrate new chemistries into biology and on a practical level to generate useful tools for research and medicine.

4. Which historical figure would you most like to have dinner with – and why?

Issac Newton. I am interested in the history of science, and he is such a pivotal figure. I am not sure he would be a great dinner companion, as he was apparently a bit anti-social. Nonetheless, I would really like to see how a mind like his worked.

5. When was the last time you did an experiment in the lab – and what was it?

The last time I was in the lab doing experiments was about a year ago synthesizing some non-natural amino acids.

6. If exiled on a desert island, what one book and one music album would you take with you?

I’m going to cheat a little bit with this one and say that I would take along the Scientific American Library series. The whole series contains fewer than 70 books, so it is not an entire library. I really enjoy learning about other areas of science, and I imagine that I would have a lot of time to read before I got my “island lab” running.

7. Which chemist would you like to see interviewed on Reactions – and why?

Jason Chin. The work he is doing is quite exciting and may bring about a real paradigm shift in the area of templated polymer synthesis.