International peer review improved Irish research rankings

This is the text of a Correspondence published in Nature (460, 949; 2009) by Conor O’Carroll of the Irish Universities Association:

Your News story ‘Italy outsources peer review to NIH(Nature 459, 900; 2009) highlights a problem common to many countries with a small population of research scientists. Ireland can be held up as a successful model in addressing this problem because, over the past eight years, funding agencies have moved to fully international peer review.

A few years ago, important research and development ventures were set up with a new infrastructure to attract talented people from abroad. The use of only Irish peer reviewers to allocate millions of research euros to a small number of universities could not stand up to the principles of objectivity, transparency and perceived fairness and would have led to conflicts of interest. Despite initial opposition, exclusively international review is now accepted; researchers want to be benchmarked internationally as well as nationally.

The typical process for research evaluation in Ireland is to consult four or five reviewers by mail for each proposal. Proposals are then assessed by a panel of invited experts, who meet in Ireland. Reviewers may be sourced through international funding agencies, or by letting applicants nominate experts themselves.

Some Italian scientists in your News story express reservations. They may well have a point, as US reviewers will probably not have any detailed knowledge of how research is conducted in Italy. One approach is to have nationals involved, either as observers or in a formal non-voting role. For example, the Irish Health Research Board organizes international mail reviews and panels, but the chair of each is Irish. They cannot participate in selection, but ensure that the correct procedures are followed and can explain the national research-funding policy. International panel members appreciate this local input, which helps them think outside their own national funding system.

Reviewing criteria often include the quality of the project, the researchers and their institutions, and the social and economic impact of the research. It is important that international reviewers focus on the quality of the first two, as the standing of institutions and the probable impact of a project can be harder for them to evaluate. Also, they should not get involved in detailed budgetary considerations, as these are strictly national.

Things have changed radically in Ireland’s research over the past ten years. In 2008, the country appeared for the first time in a list of ‘Top countries in all fields’ (ranked by citations per paper). We are now placed 19th, up from 36th place in 2003. I believe that international peer review played a significant part in this development.

Stop playing politics with the peer-review process

This text is from a recent Editorial in Nature (460, 667; 2009):

In a depressingly familiar display of irresponsible politicking, the US House of Representatives has taken aim at three studies funded by the National Institutes of Health (NIH). Representative Darrell Issa (Republican, California) introduced an amendment killing the projects on 24 July, during a debate on the NIH’s 2010 budget. The House passed the amendment by a voice vote.

Issa was unhappy that the studies looked at substance abuse and HIV risk behaviour, and that the subjects were outside the United States. One focused on Russian alcoholics, another on female sex workers in China and a third on female and transgender prostitutes in Thailand. All three passed muster with NIH peer reviewers, and together would cost about $5 million over five years. Issa wanted that money to be spent at home, and complained that HIV had been heavily studied already. But his reasoning is specious: alcoholism, prostitution and HIV do not respect borders, and any behavioural information that could help slow the transmission of HIV is crucial. Some 33 million people are infected worldwide, and a vaccine is nowhere in sight.

Issa’s tactic is not new. Since 2003, conservative House Republicans have tried at least five times to strip funding from peer-reviewed projects that drew their ire. Such meddling threatens to undermine the peer-review process as well as potentially eroding the public’s trust that science is above politics.

Also worrying is the House Democrats’ acquiescence to Issa’s amendment. Democrats facing tough re-election bids hoped to dodge Republican attacks in media adverts in their home districts that might have resulted from opposing Issa. Their assumption is that the amendment can be quietly removed when House and Senate negotiators meet to square their versions of the NIH bill before a final vote on it. But Congress should renounce all tactics that undermine peer review — and cease indulging those who use them.

Websites encourage direct public funding for research

The ‘SciFlies’ project, according to a Nature news story (Nature 459, 305; 2009), will profile scientists from a range of disciplines and the new ideas they want to pursue, or ways in which they would like to expand their current research programme. Website visitors will be able to donate any amount to support the projects they find most interesting or worthwhile.

The website itself states: “We look forward to receiving your application for funding of initial proof-of-concept STEM research projects in the range of $5,000 to $12,000. To participate in this unique online grassroots-funded opportunity, please complete the questionnaire about your project, including details of its possible outcome/impact and profiles of the researchers or research team. SciFlies.org will then depict the project for online users to view and decide if they want to make a charitable contribution in support of the project-funding goal. Once each project’s funding goal is reached, researchers will be notified and the process of funding will be completed based on a mutually acceptable agreement of terms between researcher and SciFlies.org….Projects are competing for support from the general public, so researchers are encouraged to describe their work in appealing and accessible terms, such that users can easily understand the concepts and potential outcomes. Avoid “science-speak,” acronyms or abstract language. A proposal that conveys the researcher’s excitement about a project and its potential, as well as providing insight into his/her personal story, can significantly attract donors.”

At this stage, there is nothing on the website about the peer-review or other assessment process, but there are already some projects listed. A full launch is promised for mid-July.

According to the Nature News story, “David Fries, a marine engineer at the University of South Florida in St Petersburg, conceived of and heads the SciFlies effort. His main inspiration was long-standing frustration with a research funding structure that, with few exceptions, offers scientists no intermediate steps on the way to requesting full grant funding.” Daniel Gaddy, in a comment to the News story, mentions a similar enterprise called FundScience, which also seeks direct public funding of research projects. FundScience provides a description of its activities here, but although a press release is also provided, there is no information about whether a form of independent peer-review will be used to aid potential donors.

Online patient communities

Disease-orientated consumer online communities radically change the way in which individuals monitor their health, but they could also create new ways of testing treatments and speed patient recruitment into clinical trials. So starts the editorial in the September issue of Nature Biotechnology (26, 953; 2008). From the editorial:

“Several online communities for patients now offer a wealth of anecdotal and factual information about health, and tools for networking with like-minded individuals. The web sites are public, collaborative and simple to use. They are also starting to offer patients content that goes beyond what is available through existing gatekeeper-controlled healthcare infrastructures. Some even offer to host personal medical data, empowering patients to understand and manage their individual care in a manner that is powerful and disruptive to current medical practice. If these ‘user-generated healthcare’ data can be harnessed with data from conventional biomedical and clinical research, the benefits could extend beyond patients to payors, providers and the drug industry itself.”

User-generated communities discussed in the editorial include Daily Strength, Inspire and PatientsLikeMe, the last of which has more than 7.000 registered users. PatientsLikeMe is different from other services in that patients record data about themselves and share it in an open environment. The editorial continues: “Using standardized metrics provided on the site, patients can log their symptoms, severity and progression, and drug regimens and dosages, together with the efficacy and side effects. All the data is then neatly displayed in bar graphs and progress curves. Patients can thus rapidly identify others with similar ailments in similar stages of disease. They can use the wisdom of the crowd to learn which treatments work and which don’t. This is particularly useful for patients with rare conditions (and their physicians) who might not otherwise encounter comparable sufferers.” The editorial goes on to discuss some of the benefits and disadvangates of this patient-driven form of “peer review”.

Collaborative writing and editing at Citizendium

Cross-posted at Nautlius:

Biology Week, an online “open house” for biologists, biology students and other interested people, begins today (22 September) on Citizendium, a ‘next-generation’ wiki encyclopedia started by Wikipedia co-founder Larry Sanger. (See this Peer to Peer post for a brief comparison of online encyclopaedias.)

From the Citizendium announcement: "during this week, biologists and anyone interested in the topic are invited to test the Citizendium system. Editors and authors from the project’s Biology Workgroup will be on hand to meet and greet new people on the wiki. “I strongly believe that the Citizendium system will be appealing to many scientists and scholars,” said Sanger. “Many of them just need to give it a try. Biology Week is an excuse for biologists to try out the system together.” Gareth Leng, a professor of Experimental Physiology at the University of Edinburgh, and Citizendium author and editor, described the project: ‘Our role will not be to tell readers what opinions they should hold, but to give them the means to decide, rationally, for themselves. The role of experts is critical—not to impose opinions, but to support accuracy in reporting and citing information’. "

The Citizendium, or “citizens’ compendium”, uses the same software as Wikipedia and is a public-expert hybrid project to produce a general reference resource. The community encourages general public participation, but makes a low-key, guiding role for experts. It also requires real names and asks contributors to sign a “social contract.” As a result, the project is said to be vandalism-free and, despite its youth (its public launch was just 18 months ago), has steadily added more than 8,000 articles.

Further information:

Citizendium website and press release about this project.

Biology Week homepage.

Sample article: Life, said to demonstrate the success of the collaborative-editing system.

(Thank you to Shirley Wu for alerting me to this project.)

Science of anthrax case will be submitted to peer-review

From Nature 454, 928; 21 August 2008:

The US Federal Bureau of Investigation (FBI) plans to publish in peer-reviewed journals much of the scientific evidence it used to pin the 2001 anthrax attacks on microbiologist Bruce Ivins.

Ivins’s suicide on 29 July means that the government’s case against him will never be heard in court. The trickle of circumstantial evidence released in an investigation that had previously fingered the wrong man has lawmakers, scientists and others clamouring for more information.

In response, the FBI invited scientists and journal editors to a briefing in Washington DC on 18 August to discuss the science of the case and investigators’ conclusion that a single man carried out the multiple, deadly mailings of anthrax spores. But FBI officials admit that some mysteries of the case may never be resolved. “I don’t think we’re ever going to put the suspicions to bed,” said Vahid Majidi, assistant director of the division of weapons of mass destruction at the FBI. “There’s always going to be a spore on a grassy knoll.”

In lieu of expert witnesses and cross-examinations, the FBI plans to offer the evidence for peer review and will keep much of the data quiet until they are published. FBI laboratory director Chris Hassell anticipates a dozen or so papers related to the case, in addition to those that have already been published. However, Hassell says, some details of the investigation will remain confidential, so that potential bioterrorists won’t know exactly what they’re up against. “It’s just what we have to do for national security,” he says.

“Given that Ivins cannot stand trial, putting the data through the rigorous process of scientific review may be the best available alternative,” says Alan Pearson, director of the biological and chemical weapons control programme at the Center for Arms Control and Non-Proliferation in Washington DC.

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UK science and society strategy calls for input

Charles Darwin comments on the latest UK government initiative to engage society as a whole with science: “Scientists pressed, sweating into corners as costermongers, corn-chandlers, dogs meat men, chimneysweep’s boys, executioner’s assistants, crimps, pimps, organ grinders, grooms of the stool, fullers, gentlemen of the road, members of the aristocracy and ladies of the night (to mention but a few) all clamour to press on you their views on string theory, stem cell therapy, plate tectonics or catalytic cracking.

The government has called for Society to have its say on science. I hope your supervisors and lab managers will be patient as you listen to the throngs at the gates of your institutions, and that you will wear extravagent disguises when in public to avoid molestation by the public anxious to press their scientific opinions on you.”

On a more serious but less entertaining note, the Science and Society Strategy initiative aims to capture a range of views from the general public, scientists, businesses, media, education and government. It seeks input on three key areas:

  • How to improve communication, generate interest, increase participation and convey the relevance of science;
  • How to build trust and confidence in scientific research in the public and private sectors; and
  • How to inspire young people from diverse backgrounds to become tomorrow’s skilled scientists.

    In what is believed to be the first website of its type for a Government consultation, an online interactive hub has been established to capture the feedback. It features discussion forums, videos and an interactive consultation document allowing visitors to respond to the entire strategy or to the perspectives of invited scientists, science communicators, broadcasters, policymakers and businesspeople on topics such as science teaching, how to reward good “public engagement” work and how to develop scientific literacy. The consultation will run until 17 October 2008. It is not clear from the website how the responses will be assessed. As well as commenting at the Science and Society Strategy website, you are also very welcome to contribute to the online conversation at Charles Darwin’s blog.

Peer-review is crucial for Italy’s research programme

Ignazio R. Marino* writes in Correspondence in the current issue of Nature (453, 449; 22 May 2008):

‘Italy must invest more in science and technology’ according to I. Bertini, S. Garattini and R. Rappuoli in Correspondence (Nature 452, 685; 2008). They lament the Italian lack of financial resources and political attention for research, technology and education. As a researcher, clinician and academician, I share their concerns. However, as former chair of the health committee of the Italian Senate, I take exception to their implication that none of the major political parties recognizes science, technology and education as crucial for the future of the country’s economy.

The 2007 and 2008 national budget laws, drawn up when the centre-left coalition was in power, allocated 96 million (US$149 million) to projects submitted by researchers under 40 years old. These are judged by an international committee comprising ten scientists under 40 — five from foreign institutions — selected according to impact factor and citation index scores. This alone is a revolutionary approach for the unregulated Italian system of research funding allocation.

In spite of such advances, Italy is still far behind in research investment, and this needs to change. But the crucial switch is not simply to increase funding. The way the new government should proceed is to reform the allocation criteria for funding and to start applying across the board the selection and evaluation rules of peer review. Such a system would acknowledge meritocracy and free researchers from the virtual slavery under which they have been kept by old academicians.

By applying international rules of peer review and evaluating grant applications only on the basis of merit, looking at curricula and objectives, comparing lists of publications and evaluating results, we will provide opportunities for Italy’s scientists, thereby promoting the country’s intellectual, cultural and economic growth.

*Department of Surgery, Jefferson Medical College, 19107 Philadelphia, Pennsylvania, USA, and Senate of the Republic of Italy, Piazza Madama snc, 00186 Rome, Italy.

Paying taxes is not a qualification for assessing research programmes

Massimo Pinto has discovered an unusual qualification for being a peer-reviewer: paying your taxes. Since 2006, Italians have been allowed to donate 0.5 per cent of their taxes to charity in a highly specific way (previously, such donations had to be made to the church or the state). On his Nature Network blog Science in the Bel Paese, Dr Pinto points out that one can elect to donate one’s contribution to specific research institutes. Leaving aside the fact that some of the intended recipients do not yet seem to have received their 2006 or 2007 contributions, specifying an individual project could have the effect of bypassing the peer-review system, particularly in Italy, where science funding levels are low. Dr Pinto writes that taxpayers have three choices:

—donate to funding agencies. It happens in many countries of the world. As long as the agency is committed to assign that money in a transparent manner, including, possibly, peer review, that should be fine.

—donate to individual institutes. In this way, taxpayers may be exercising a little peer-review power. Less troublesome, perhaps, if the institute acts, internally, as the agency above. Still, it is not obvious why institute A should be so much better than institute B. Maybe the cleverest scientist, with the best idea right now, is in institute B.

—donate to a specific project. Here the taxpayers are exercising bolder peer-review powers, and that raises a red flag

As some institutes have taken to advertising the importance of their research and the difference one’s money would make to humanity (no details provided in the advertisements), there is definitely scope for a loophole or two to be closed. As Dr Pinto puts it, “The particular advert that irritated me was a dialogue between two young citizens; one was asking whether the researcher in XYZ University were really going to deliver results, and the other one replied, reassuringly, that they were among the very best in Europe. Donating to them was a guarantee of success.”

Refining and communication of science via blogs

This post is a continuation of the discussion about blogging and peer-review by selected reactions at RealClimate (a climate scientists’ community blog) to Nature Geoscience’s two commentaries on blogging.

Philip Machanick writes that the "problem with blogs is that there is no way for an outsider to know which are reasonably careful creations of informed scientists, which are opinions of the scientifically illiterate, and which are astroturf creations designed to confuse critics of science that is in conflict with an industry. Given that terrain, I would rather have something like RealClimate than not: it helps to balance things out. Errors tend to be corrected quickly here as a consequence of a large informed readership (even if it is sometimes annoying that you get drive-by ignoramuses who don’t benefit from getting their misconceptions answered). He goes on to suggest that a site such as RealClimate is of value in providing a forum for rebuttals of peer-reviewed science in order to develop a consensus on whether a “formally published rebuttal is worth the effort”.

Ray Ladbury’s view: “When it comes to peer reviewed papers, one has to presume the reader will have a minimum level of familiarity with the subject matter. One also presumes that the reader will have a day job, and so the question becomes whether the information in the paper is of sufficient interest to the average scientist in the community to say, “Hey, take a look at this. It looks mostly correct to me and has some interesting information/insights/methods…” This is not in any way the gold standard in the sciences. The gold standard comes when the community as a whole says, “Hey, cool, I can use this.” The paper is cited. The techniques are used. Science advances. Eventually, what was in the paper becomes part of the tacit knowledge assumed by reviewers.

The tacit knowledge one can presume for a blog like Realclimate is much lower. One presumes there is an interest in the subject–why else would the reader be perusing the blog. One presumes at least a passing acquaintance with the scientific method and maybe some familiarity with basic results like conservation of energy, etc. One could perhaps assume that the average reader has taken the time to acquaint him- or herself with material to which one is vectored via the ”https://www.realclimate.org/index.php/archives/2007/05/start-here/“>“Start Here” button–although this is far from Universal.

For the average newspaper reader of a science story, the tacit knowledge is nearly nonexistent–or worse, wrong. And then we have the blogosphere, where information density is at best, rarified and often toxic…….in an information economy, it seems that all too many readers and journalists are content to remain paupers.”