Yucca Mountain is dead, long live Yucca Mountain

yucca.mountain.latimes.ap.jpgWe’ve been kicking things around for more than a year, but we simply cannot make up our mind on what to do. And since there’s no money left anyway, well, we might as well give up and shut things down. No?

That’s the gist of a surreal decision issued Friday by the Nuclear Regulatory Commission (NRC) regarding the Yucca Mountain nuclear waste repository in Nevada. The opinion comes in response to a ruling last year by the internal Atomic Safety Licensing Board, which found that the Obama administration does not have the legal authority to simply walk away from the project (background here). Congress already wrote the law designating Yucca, the board said, and so the Energy Department must now follow science as its guide.

In celebration of the fact that this is one of those rare occasions in the news business where a legal decision is in fact shorter than the stories that follow, I will hereby post the NRC’s response in its entirety:

On June 30, 2010, the participants were invited to submit briefs as to whether the

Commission should review, and reverse or uphold, the Board’s decision denying the

Department of Energy’s motion to withdraw its construction authorization application with

prejudice. Upon consideration of all filings in this matter, the Commission finds itself evenly

divided on whether to take the affirmative action of overturning or upholding the Board’s

decision.

Consistent with budgetary limitations, the Board has taken action to preserve information

associated with this adjudication. In furtherance of this, we hereby exercise our inherent

supervisory authority to direct the Board to, by the close of the current fiscal year, complete all

necessary and appropriate case management activities, including disposal of all matters

currently pending before it and comprehensively documenting the full history of the adjudicatory

proceeding.

Short, sweet, and dreadfully confusing.

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Promising signs emerging from HIV gene therapy trials

blood2.jpgResults continue to trickle out from two clinical studies of an innovative HIV treatment, in which a subset of patient immune cells are extracted from the blood, genetically modified to make them resistant to HIV and injected back into the patient. Carl June, at the University of Pennsylvania School of Medicine in Philadelphia, where one of the trials is being conducted, presented data from the first two years at a small meeting of experts outside of Philadelphia hosted by the Foundation for AIDS Research (amfAR).

Around nine patients have completed the trials at UPenn and at the University of California in Los Angeles without any severe adverse events. And counts of CD4+ T cells, both natural and genetically altered, have gone up in all but one patient and migrated to gut mucosa. Although he could not yet speak about levels of virus in the blood for all patients, he said that their results “suggest there’s an antiviral effect”, even when antiretroviral treatment was temporarily halted for a small number of patients.

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Trove of exoplanets unveiled

hd85512.jpg European astronomers today announced the discovery of more than 50 new exoplanets — and are now confident enough to predict that half of all Sun-like stars should have at least one planet.

Included in the raft of discoveries is one that sits in the habitable zone (artist’s rendition pictured). This exoplanet, called HD 85512 b, is 3.6 times the mass of Earth, and orbits its star at a quarter of the distance Earth does the Sun, around the orbit of Mercury. Since the star is smaller than the Sun — and about 1,000 degrees cooler — the planet orbits at a distance where liquid water can exist. The same European team two years ago confirmed the existence of a first habitable-zone exoplanet, but that planet, Gliese 581 d, is 5.6 times the mass of Earth.

Lisa Kaltenegger of the Max Planck Institute for Astronomy in Heidelberg, Germany, cautions that a lot of assumptions would have to hold for the planets to be habitable. It is not known whether the new planet, HD 85512 b, is rocky or not. Kaltenegger says it will also be important to build telescopes capable of discerning whether atmospheres in exoplanets like HD 85512 b have chemical constituents such as methane, oxygen and water. “We have great targets now,” she says.

The discoveries were made using an instrument called HARPS on a 3.6-metre telescope at La Silla Observatory in Chile, run by the European Southern Observatory. The announcement was timed to coincide with presentations at an exoplanet conference going on in Wyoming.

It’s the latest salvo in a competition between ground-based teams like HARPS, and the NASA space telescope Kepler. Using rival methods, astronomers are pushing ever closer to the goal of discovering another Earth. NASA announced in February that the Kepler mission has five near-Earth-sized habitable-zone planet candidates that it is trying to confirm. The team is planning a press conference for Thursday.

Protein folding and malaria meds take Laskers

horwich_hartl.jpgTwo protein biochemists have nabbed this year’s Albert Lasker Basic Medical Research Award. Franz-Ulrich Hartl, of the Max Planck Institute for Biochemistry in Munich, Germany and Arthur Horwich, of Yale University School of Medicine in New Haven, Connecticut, will share the $250,000 prize.

Sometimes working in collaboration, the scientists helped explain how proteins called chaperonins help other proteins fold into complicated three-dimensional shapes that are sometimes made up of multiple chains of amino acids. In a test tube, proteins typically fold into these shapes on their own, but those destined for the mitochondria, for instance, need help from the cage-shaped chaperonins.

Protein mis-folding has been implicated in a number of diseases, including type 2 diabetes, Alzheimer’s and Parkinson’s, as well as basic biological processes like ageing.

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Explosion rocks French nuclear site

Update 16:27 BST: SOCODEI says that the accident is now fully under control and that no radioactive material has been released (download statement).

An explosion has rocked a nuclear waste facility in Southern France, killing one and injuring four others. The blast occurred shortly before noon local time, and the ensuing fire was under control as of 13:06 CEST. No radioactivity has been released beyond the site, according to Sabine Mezard, a spokeswoman for EDF, which oversees the facility. The French Nuclear Safety Authority (ASN) is already investigating the accident.

The plant, known as CENTRACO, is administered by SOCODEI, a subsidiary of EDF that oversees waste treatment. According to the company’s website, CENTRACO melts down scrap metal and incinerates low-level waste for its parent company, which operates nuclear plants across France. The facility is located on the edge of a nuclear complex at Marcoule which also includes a Melox reprocessing facility for recycling spent fuel and several decommissioned reactors. There is no evidence that any of the other facilities have been threatened by the explosion and fire.

An undated academic review of the CENTRACO site says that the facility has been in operation since 1999. It melts down lightly-irradiated scrap metal and forges it into large canisters that can be used as radioactive waste containment vessels. It also incinerates low-level waste — filters, coveralls and other odds and ends — and then compresses the ash into metal drums for storage. The review indicates that the specific activity of the waste over a ten-year period is 200×109Becquerels. For comparison, that’s less than a millionth the radioactivity estimated to have been released by Fukushima, which stands at 770,000×1012Bq. Assuming this report is correct, the risk to the public is probably very low.

France depends on nuclear power for over three-quarters of its electricity, and it seems unlikely that the latest accident will cause the country to alter its course. Nevertheless, this fire is bound to cause a stir, especially coming just six months after the triple meltdown at Fukushima Daiichi nuclear plant in Japan. The local paper Midi Libre is already reporting that several green groups are criticizing the response to the accident.

Duke lands in court over flawed clinical trials

West_campus32.jpgTwo cancer patients and six families of deceased patients who had enrolled in clinical trials based on geneticist Anil Potti’s allegedly flawed data are suing the beleaguered researcher, one of his collaborators, Duke University (his former employer) and several Duke officials.=

Potti had claimed a link between gene expression profiles and responsiveness to particular drugs, which was used to set up trials in which patients were allocated to treatments depending on their expression profiles. Five of his papers have been retracted and an investigation into flaws in his data is ongoing.

Patient attorney Thomas Henson of HensonFuerst in Raleigh, North Carolina, told Nature in July that the firm was still working to understand how around 100 patients enrolled by Duke might have suffered harm as a result of Potti’s actions — and actions by Duke in continuing the trials after concerns were first raised about his research, before later halting them.

Now, the firm is making its case. A complaint filed on 7 September in Durham County Superior Court in North Carolina alleges that patients enrolled in the trials as a result of misrepresentations by Potti did not give proper informed consent, were subjected to unnecessary biopsies to assess their suitability for the trials, and were allocated treatments different from the standard as a result of their enrollment.

Duke has claimed that all the treatments received by patients were standard and that the flawed gene expression formula was used only to allocate them to one arm or another. The University has said it will not comment on the litigation.

Image: West Campus / Duke Photography

FDA reorganization inspires hope for better coordination

By Mike May

In an agency-wide e-mail message on 13 July, US Food and Drug Administration Commissioner Margaret Hamburg unveiled a massive reorganization of the regulatory watchdog’s 41-year-old management structure. “The most obvious change you will see,” she wrote, “is that the Agency’s programs, in terms of a reporting chain to me, will be divided into ‘directorates’ that reflect the core functions and responsibilities of the Agency.” In addition to the existing offices, she said the FDA would also create a new Office of Operations as well as a deputy commissioner for Global Regulatory Operations and Policy “focused on grappling with the truly global nature of today’s world.”

For the pharmaceutical industry, the most important change could be the addition of the Office of Medical Products and Tobacco, which will be directed by Stephen Spielberg, who will assume the new post by the end of September. Speilberg is tasked with helping to coordinate work across the FDA’s centers for drug, biologics, medical devices and tobacco products. In the past, each of these centers reported directly to the commissioner.

(Click here to continue reading.)

Becoming a global researcher

Posted on behalf of Hywel Curtis

What would it take for your research to go global? At Vitae’s international researcher development conference, held in Manchester in the United Kingdom last week, several speakers offered advice on how to boost your international profile. It’s an expanding area of interest: Emma Gillaspy, Vitae’s north-west hub manager, explains that institutions throughout academia are looking at how they can support the development of truly global researchers, and half of respondents to a recent Naturejobs poll said it was ‘very important’ for young researchers to work abroad early in their careers.

Furthermore, an increasing focus on international collaboration in funding calls and the development of new platforms and technologies mean it is easier than ever before for researchers to operate internationally. Adopting a global outlook is also highly beneficial for careers in a growing number of fields — not solely in disciplines that traditionally expect it, such as astrophysics. So how do you take those first steps towards gaining international credentials?

Work on ‘international’ research

Most fields of research offer scope for you to gain international experience. “Research is inherently a global endeavour,” says Claire McNulty, adviser on life sciences and science policy at the British Council. To start with, find out which areas of research your current institution recognises as being of international significance, as you are likely to receive more support in these areas. “International ties lend greater prestige to institutions,” explains Julie Reeves, the early career researcher (ECR) training coordinator at the UK’s University of Southampton. Quite simply, if you aren’t working in an area that offers international opportunities, you’ll need to consider moving into one that does.

Make connections, seize opportunities

Your network of contacts is potentially the best source of international opportunities. Lynn Clark of the graduate skills team at the UK’s University of Liverpool says that making connections with those who have a “global mindset” and value international collaboration could be the catalyst for your global experience. As with all aspects of your research career it is vital to identify and develop meaningful relationships with those in your field — whether they are someone you met at a conference, a previous collaborator or a personal connection. In addition, opportunities may arise in calls for funding, research partners or collaborations that have international elements, so be aware of these. Also watch out for industry research and development projects and exchanges.

Explore working abroad

If you’re considering working in another country, be sure this is really the right choice for you. Seek advice from those with experience and consider your family, financial situation and career prospects when evaluating options. “It is about your physical mobility to some degree,” says Clark.

You need to be willing and able to travel and live in a foreign culture for extended periods. Employers “are looking for someone who can cope with diversity”, explains Reeves. Consider whether you will really be able to thrive in a new environment despite professional or cultural differences. For example, “one particular problem for UK researchers is the language barrier,” says McNulty of the British Council, which is why many choose to gain international experience in the US.

Move successfully

To prepare for an international move, find out what support your home institution offers and query the internationalisation strategy it has in place. Additional help may be available at national and international levels; in Europe, for example, a scientific visa programme, coordinated by EURAXESS, helps researchers from non-European countries to work in the region. As part of the programme, research organizations sign hosting agreements with individual researchers. “The hosting agreement is fast-track immigration for researchers,” says Magdalena Wislocka, hosting agreement scheme manager at the Irish Universities Association. Support such as this can simplify your relocation significantly.

Succeed overseas

Once you have acquired a position, there are many ways to make your international experience a success. One area to focus on is preserving the same standards and professional integrity that you maintained previously. Cross-cultural supervision issues are a key concern for those managing researchers internationally, says Vitae’s Gillaspy, so it’s important to foster self-management skills. These can also benefit your career in general (see ‘Getting a pay rise in academia’).

In addition, operating effectively abroad will require you to develop global awareness and think beyond literature reviews to the people, institutions and cultures that those citations represent. This approach is used in Japan to improve graduate education, helping to foster researchers with a “comprehensive and panoramic” view of their field, particularly in the natural sciences, says Mutsuhiro Arinobu, comptroller of the University of Tokyo.

Finally, an important aspect of an effective global research experience is the new relationships you develop while abroad. Working alongside successful researchers in other countries will enhance your own international standing and benefit your career both during and after the placement.

If you have any other advice for researchers looking to gain international experience please feel free to share it below.

Remembering the Colonel: William Lipscomb as chemist, musician and friend

The grand pipe organ in Harvard’s Memorial Church gave way to a clarinet, piano and strings as friends gathered Saturday to remember musician and Nobel Prize winner Bill Lipscomb.

William Nunn Lipscomb Jr., who died on April 14, was also known to some as “The Colonel,” a reference to his Kentucky roots. He won the chemistry prize in 1976 for his basic research mapping chemicals, in particular, the structure of boranes — compounds of boron and hydrogen.

After a wistful rendition of Scott Joplin “Solace: A Mexican Serenade,” friend and fellow Nobelist Dudley Herschbach introduced speakers. All remembered Lipscomb as some combination of colleague, teacher, musician and friend.

Fellow chemist E.J Corey remembered regular trips to professional meetings, where he and Lipscomb talked across the aisle for entire flights. One time, he said, a passenger commented on how nice it was to overhear such committed high school science teachers.

Not quite, but Lipscomb was a teacher, one who had “an enthusiasm that was transmitted naturally to his students,” Corey said.

One was Eric Gouaux, a grad student from 1984 to 1989. Speaking next, he said it was never “professor” or “doctor” or" William" or “Bill.” Students always referred to Lipscomb as the Colonel.

And, the Colonel’s advice to them was:“Make mistakes — quickly — and then move on.”

Gouaux said when it was time to leave Harvard, Lipscomb “trusted us more than we trusted ourselves and in doing so gave us the strength to succeed.”

Lipscomb was remembered as a clarinetist, by both the speakers and the musicians. They played Finzi, Brahms and Mozart. He was a “riffster” who went to University of Kentucky on a music scholarship and played with Dizzy Gillespie.

He was the first chemist after four generations of MD’s in his family. Although Corey said that Lipscomb “knew so much about so many things,” the Colonel himself said otherwise during his Nobel banquet speech.

“The award this year of the Nobel Prize in chemistry for research in pure inorganic chemistry is an important event. It is a reminder that we know even now considerably less about most of the chemical elements than we know of the chemistry of carbon or the chemistry of processes underlying life itself.”

And, he was a good sport, a regular representative of the Nobels at each year’s Ig Nobels. (He once dressed as a beer bottle.) Marc Abrahams, keeper of the annual, riotous Nobel spoof, quoted from his interview with Lipscomb. (Click here for a special Lipscomb issue of The Annals of Improbable Research.)

After the event, Abrahams shared a Lipscomb story:

“Years ago he and Jean (his wife) were at a dinner in Germany, and Bill found himself seated next to the widow of Werner Heisenberg, the man who had devised the Heisenberg Uncertainty Principle. She introduced herself to Bill, explaining that she was Mrs. Heisenberg. Bill paused just a beat, and replied ‘Are you SURE?’”

Keeping up with the journals

[This post is an abridged version of the editorial in the September 2011 issue — the full text can be accessed here, available for free to all registered users. We welcome feedback on our editorials in the comments section below.]

With more and more scientific articles and journals being published, how can you effectively keep abreast of new research relevant to your own projects?

The ever-increasing number of chemistry-related journals and articles has been discussed and debated for years. Usually the focus falls on three issues: the increase in the overall number of articles, the increase in the number of (usually more specialized) journals, and the fragmentation of results by researchers to maximize their number of publications. The first issue is easy to explain: there are simply more scientists now and they all depend critically upon the publication of their work. Few scientists would argue against more science and this issue seems here to stay.

The increase in the number of specialized journals is a more contentious matter. In 1973, a group of eleven concerned chemists lamented the “recent proliferation of journals”. They argued that “the literature should be so constructed as to deter trends towards overspecialization, and should foster communication among chemists working in different areas”.

The sentiment about improving interdisciplinary communication is admirable, but the general growth in the number of publications makes it unrealistic to expect researchers to keep up with current studies by reading only a few select journals. Compartmentalization was an inevitability that has some sound logic behind it — researchers can read specialist journals knowing that they will find papers of interest and can publish in them assured that their peers will be more likely to see their work.

With the literature now so vast, keeping abreast of what is going on in a given scientific field has become a real challenge, but remains an important aspect of practising cutting-edge science. Not knowing about a published paper relevant to your research can have detrimental consequences when trying to get published or funded.

To keep track of the literature, the Nature Chemistry editors all use RSS feeds with a feed reader that allows papers to be shared among the team. You subscribe to the feeds of journals and when they publish an article the feed is updated. This might sound just like an e-mail alert or like browsing the journal website, but RSS feeds are far more straightforward to organize, track and search.

There are other online tools that can be used in a similar way. Twitter, as a rapid online information exchange, is a great way of keeping up to date with news of more general scientific interest, but unless your research community is actively using it to swap interesting papers, it is much less useful for keeping track of more specialized areas. Online reference-management programmes such as Connotea and Mendeley also have the facility to share articles. The website ‘Faculty of 1000’ provides the biomedical community with a place to find papers that other researchers find interesting and an equivalent in the chemistry community would be most useful. It relies on academics identifying and evaluating articles from the literature and can, quite quickly, give an idea of which papers are piquing the interest of their peers.

With a little organization and some useful online tools, the apparently daunting task of keeping up to date can be achieved: like eating an elephant, it has to be done one bite at a time.

You can read full the editorial here (registration is free).

Gavin

Gavin Armstrong (Senior Editor, Nature Chemistry)